RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RASGEF1BQ0VAM2 473 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ILF2Q12905 390 aaKnown RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 RPA4Q13156 261 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 C16orf72Q14CZ0 275 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ODF4Q2M2E3 257 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 DCAF4L1Q3SXM0 396 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ZNF789Q5FWF6 425 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ZNF776Q68DI1 518 aaPredicted RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 FAAP20Q6NZ36 180 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ALKBH5Q6P6C2 394 aaKnown RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 ALKAL1Q6UXT8 129 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 PIGWQ7Z7B1 504 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 PLD3Q8IV08 490 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 BBS7Q8IWZ6 715 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 SFRP1Q8N474 314 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ARL10Q8N8L6 244 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 STKLD1Q8NE28 680 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 OR1J1Q8NGS3 322 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 GANCQ8TET4 914 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 HSD17B8Q92506 261 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ARHGAP45Q92619 1136 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 BCL2L2Q92843 193 aaPredicted RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 ZMYND19Q96E35 227 aaPredicted RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 CEP170P1Q96L14 293 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 AK8Q96MA6 479 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ATOH8Q96SQ7 321 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ATP6V0BQ99437 205 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 RIT2Q99578 217 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 IL12RB2Q99665 862 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 PSD2Q9BQI7 771 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ZNF559Q9BR84 538 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 SLC5A7Q9GZV3 580 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 LAT2Q9GZY6 243 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 WDR13Q9H1Z4 485 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 SNX25Q9H3E2 840 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 LRRN3Q9H3W5 708 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 FBXL12Q9NXK8 326 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 ZDHHC2Q9UIJ5 367 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 SLC7A7Q9UM01 511 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 GPR132Q9UNW8 380 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 KCNJ14Q9UNX9 436 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 NTNG1Q9Y2I2 539 aa3.32□□□□□ -1.88
CD44-235ENST00000532339 MRPS28Q9Y2Q9 187 aaKnown RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 TNRC6AQ8NDV7 1962 aaKnown RBP3.32□□□□□ -1.88
CD44-235ENST00000532339 TENM1Q9UKZ4 2725 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 MYO7BQ6PIF6 2116 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 A0A0A6YYC8 382 aaPredicted RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 KRTAP16-1A8MUX0 517 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 F8VVB4 439 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 F8VWA3 439 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 I3L1I5 382 aaPredicted RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 CTDSPLO15194 276 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 TTI1O43156 1089 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 AQP9O43315 295 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 CHMP2AO43633 222 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 SNX3O60493 162 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 KERAO60938 352 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 CEACAM4O75871 244 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 CSF2P04141 144 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 EPORP19235 508 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 ZNF10P21506 573 aaPredicted RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 CA4P22748 312 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 EPHA2P29317 976 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 SMSP52788 366 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 YBEYP58557 167 aaPredicted RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 HAND2P61296 217 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 PSMC5P62195 406 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 TAF10Q12962 218 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 TMEM187Q14656 261 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 EMC2Q15006 297 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 DEFB133Q30KQ1 61 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 DEFB113Q30KQ7 82 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 DCAF12Q5T6F0 453 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 SDHAF4Q5VUM1 108 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 CES4AQ5XG92 561 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 FAM166AQ6J272 317 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 SH2D5Q6ZV89 423 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 ZNF554Q86TJ5 538 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 TMEM135Q86UB9 458 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 TBC1D10CQ8IV04 446 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 LGI2Q8N0V4 545 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 MAPKAPK5-AS1Q8N8E1 139 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 OR8H1Q8NGG4 311 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 NCOA7Q8NI08 942 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 PYCR2Q96C36 320 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 AGAP3Q96P47 875 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 ATG101Q9BSB4 218 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 UBAC1Q9BSL1 405 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 SPZ1Q9BXG8 430 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 LSG1Q9H089 658 aaKnown RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 ILKAPQ9H0C8 392 aaPredicted RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 NEUROG2Q9H2A3 272 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 LRTM1Q9HBL6 345 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 RAB9BQ9NP90 201 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 PHPT1Q9NRX4 125 aaPredicted RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 FGF21Q9NSA1 209 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 PNPLA3Q9NST1 481 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 RBM28Q9NW13 759 aaKnown RBP3.31□□□□□ -1.88
CD44-235ENST00000532339 ELOVL2Q9NXB9 296 aa3.31□□□□□ -1.88
CD44-235ENST00000532339 BARHL2Q9NY43 387 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms