RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 WDR45Q9Y484 360 aa19.69■□□□□ 0.74
VPS28-212ENST00000530836 NUP210LQ5VU65 1888 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.68■□□□□ 0.74
VPS28-212ENST00000530836 MEN1O00255 615 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 SYT5O00445 386 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 SOCS2O14508 198 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 RECKO95980 971 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 KLK3P07288 261 aaPredicted RBP19.68■□□□□ 0.74
VPS28-212ENST00000530836 SSTR4P31391 388 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 DNAJA1P31689 397 aaKnown RBP19.68■□□□□ 0.74
VPS28-212ENST00000530836 DUSP8Q13202 625 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 DCST2Q5T1A1 773 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 SENP5Q96HI0 755 aaPredicted RBP19.68■□□□□ 0.74
VPS28-212ENST00000530836 ZNF300Q96RE9 604 aaPredicted RBP19.68■□□□□ 0.74
VPS28-212ENST00000530836 SLC29A1Q99808 456 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 ZNF350Q9GZX5 532 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 SAP130Q9H0E3 1048 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 REEP1Q9H902 201 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 NDUFAF4Q9P032 175 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 ZNF232Q9UNY5 417 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 SLC9A8Q9Y2E8 581 aa19.68■□□□□ 0.74
VPS28-212ENST00000530836 TMEM8BA6NDV4 472 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 STMND1H3BQB6 276 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 TLX3O43711 291 aaPredicted RBP19.67■□□□□ 0.74
VPS28-212ENST00000530836 DNAJB5O75953 348 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 HPRP00739 348 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 PABPC4LP0CB38 370 aaKnown RBP19.67■□□□□ 0.74
VPS28-212ENST00000530836 UQCRBP14927 111 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 RHCEP18577 417 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 PRKAR1BP31321 381 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 GABRA3P34903 492 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 CHRNEQ04844 493 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 NRF1Q16656 503 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 SHQ1Q6PI26 577 aaKnown RBP19.67■□□□□ 0.74
VPS28-212ENST00000530836 WDR53Q7Z5U6 358 aaPredicted RBP19.67■□□□□ 0.74
VPS28-212ENST00000530836 PEX5LQ8IYB4 626 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 ZNF615Q8N8J6 731 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 SNIP1Q8TAD8 396 aaKnown RBP19.67■□□□□ 0.74
VPS28-212ENST00000530836 DOK4Q8TEW6 326 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 TSLPQ969D9 159 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 EPYCQ99645 322 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 NXT1Q9UKK6 140 aaKnown RBP19.67■□□□□ 0.74
VPS28-212ENST00000530836 ENPP4Q9Y6X5 453 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 SEC16AO15027 2179 aa19.67■□□□□ 0.74
VPS28-212ENST00000530836 VSTM2BA6NLU5 285 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 DLGAP3O95886 979 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 DCTP40126 519 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 PSG6Q00889 435 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 ZNF311Q5JNZ3 666 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 DHRS4L2Q6PKH6 230 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 FRRS1Q6ZNA5 592 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 DTX1Q86Y01 620 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 GPR32P1Q8NGA4 272 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 APOBEC4Q8WW27 367 aaKnown RBP19.66■□□□□ 0.74
VPS28-212ENST00000530836 OSBPL11Q9BXB4 747 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 WDR54Q9H977 334 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 Q9N2J8 555 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 SLC13A4Q9UKG4 626 aa19.66■□□□□ 0.74
VPS28-212ENST00000530836 PDLIM1O00151 329 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 LGI1O95970 557 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 HEXBP07686 556 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 THBS1P07996 1170 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 FPR1P21462 350 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 TRHRP34981 398 aaPredicted RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 OR1E2P47887 323 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 ALDH3A2P51648 485 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 TYW3Q6IPR3 259 aaKnown RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 TIPARPQ7Z3E1 657 aaKnown RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 STK32CQ86UX6 486 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 CYP4Z1Q86W10 505 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 ZNF619Q8N2I2 560 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 KDF1Q8NAX2 398 aaPredicted RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 MORN4Q8NDC4 146 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 C16orf52Q8NHV5 167 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 RNF31Q96EP0 1072 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 RDH12Q96NR8 316 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 PIP5K1AQ99755 562 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 RBM4BQ9BQ04 359 aaKnown RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 G6PC3Q9BUM1 346 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 RBM4Q9BWF3 364 aaKnown RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 KLHL28Q9NXS3 571 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 HRKO00198 91 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 EI24O14681 340 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 NME6O75414 186 aaPredicted RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 ATXN8OSP0DMR3 200 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 SLC37A1P57057 533 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 DCAF7P61962 342 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 DAG1Q14118 895 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 LARS2Q15031 903 aaKnown RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 C6orf15Q6UXA7 325 aaPredicted RBP19.65■□□□□ 0.74
VPS28-212ENST00000530836 LAPTM4BQ86VI4 370 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 ZNF248Q8NDW4 579 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 OR52P1PQ8NH57 321 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 METTL21AQ8WXB1 218 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 PIK3R3Q92569 461 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 AMBRA1Q9C0C7 1298 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 EVA1AQ9H8M9 152 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 USE1Q9NZ43 259 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 COPS7AQ9UBW8 275 aa19.65■□□□□ 0.74
VPS28-212ENST00000530836 SAMHD1Q9Y3Z3 626 aaKnown RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms