RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RIPPLY3P57055 190 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MAP3K7CLP57077 242 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HAND2P61296 217 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 VBP1P61758 197 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 POLR2GP62487 172 aaKnown RBP eCLIP1.58□□□□□ -2.16
NUP54-208ENST00000508604 CCNA1P78396 465 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GFPT1Q06210 699 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 DNAJC3Q13217 504 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 TAZQ16635 292 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MOGQ16653 247 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CEP55Q53EZ4 464 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FBXO48Q5FWF7 155 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FAM173BQ6P4H8 233 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ERN2Q76MJ5 926 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 BZW1Q7L1Q6 419 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 DNAJB7Q7Z6W7 309 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF677Q86XU0 584 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ERI1Q8IV48 349 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 APCDD1Q8J025 514 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF619Q8N2I2 560 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ARHGAP18Q8N392 663 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 Q8N9G6 341 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF565Q8N9K5 539 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 DNAAF3Q8N9W5 541 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 IPMKQ8NFU5 416 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CD99L2Q8TCZ2 262 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MAIP1Q8WWC4 291 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 NCLNQ969V3 563 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 EFHD2Q96C19 240 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 TMA16Q96EY4 203 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF274Q96GC6 653 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 CCDC42Q96M95 316 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 JAKMIP1Q96N16 626 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 RPRD1AQ96P16 312 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 INTS14Q96SY0 518 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CIB1Q99828 191 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ADPGKQ9BRR6 497 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 NUSAP1Q9BXS6 441 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 GBA3Q9H227 469 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 TPK1Q9H3S4 243 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 VIPAS39Q9H9C1 493 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CRLF2Q9HC73 371 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FARSBQ9NSD9 589 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ANO10Q9NW15 660 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 TAS2R7Q9NYW3 318 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 DNAJB9Q9UBS3 223 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 TRIM10Q9UDY6 481 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HMGXB4Q9UGU5 601 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 VANGL2Q9ULK5 521 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CHMP2BQ9UQN3 213 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 C15orf41Q9Y2V0 281 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FAM32AQ9Y421 112 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ASB3Q9Y575 518 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 TTC21BQ7Z4L5 1316 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CEP162Q5TB80 1403 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8QA0A0J9YX86 632 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 C1orf232A0A0U1RR37 186 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 A0A1B0GWJ7 208 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MAGEB16A2A368 324 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8IPA6NC78 632 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8OA6NCC3 632 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SLC9B1P1A6NJY1 282 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SYCE1LA8MT33 242 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SERPINE3A8MV23 424 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8KD6RF30 607 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8NF8WBI6 632 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8TH3BQL2 631 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8MH3BSY2 632 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 NDUFS8O00217 210 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PRAF2O60831 178 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 NIPSNAP2O75323 286 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CLN5O75503 358 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CRTAPO75718 401 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 TRIM16O95361 564 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 IGHG3P01860 377 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GBAP04062 536 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GSTA2P09210 222 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CLTAP09496 248 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FAM58BPP0C7Q3 252 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 UBTFL6P0CB48 400 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8HP0CJ92 632 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FOSL2P15408 326 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF44P15621 663 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 LBPP18428 481 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 EIF2S2P20042 333 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 CRABP2P29373 138 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HMOX2P30519 316 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 RFC4P35249 363 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 LONP1P36776 959 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 GP5P40197 560 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PRKCIP41743 596 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MFAP3P55082 362 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 HADHBP55084 474 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 PFN3P60673 137 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 UBE2IP63279 158 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 KDSRQ06136 332 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SPAG1Q07617 926 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ITGB3BPQ13352 177 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ORC2Q13416 577 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 SCARB2Q14108 478 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms