RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	NME2	P22392	152 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	TACR1	P25103	407 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	S100A3	P33764	101 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	PTGER1	P34995	402 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	RFC3	P40938	356 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	STT3A	P46977	705 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	NCBP2	P52298	156 aa	Known RBP eCLIP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	DIO3	P55073	304 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ID2	Q02363	134 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ID3	Q02535	119 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	LRRC74A	Q0VAA2	488 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF267	Q14586	743 aa	Predicted RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ELAVL1	Q15717	326 aa	Known RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	EXT1	Q16394	746 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	DPY19L1	Q2PZI1	675 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	PDCD4	Q53EL6	469 aa	Known RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	SLC25A25	Q6KCM7	469 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	PAPD4	Q6PIY7	484 aa	Known RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	FGD2	Q7Z6J4	655 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	CHERP	Q8IWX8	916 aa	Known RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ANKS4B	Q8N8V4	417 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	MORN4	Q8NDC4	146 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	OR14A16	Q8NHC5	309 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	STK35	Q8TDR2	534 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	PHF10	Q8WUB8	498 aa	Known RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	STON2	Q8WXE9	905 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ANKRD9	Q96BM1	317 aa	Predicted RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	C11orf24	Q96F05	449 aa	Predicted RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ZBED6CL	Q96FA7	236 aa	Predicted RBP	8.06	□□□□□ -1.12
USP4-213	ENST00000488520	FCRL1	Q96LA6	429 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	VKORC1	Q9BQB6	163 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	EBF4	Q9BQW3	602 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	DUSP26	Q9BV47	211 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	RMND5A	Q9H871	391 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	C3orf14	Q9HBI5	128 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ADAP2	Q9NPF8	381 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	AIG1	Q9NVV5	245 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	TAS2R7	Q9NYW3	318 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	CRIM1	Q9NZV1	1036 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ZIM2	Q9NZV7	527 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	HEY2	Q9UBP5	337 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	BCAP29	Q9UHQ4	241 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	ATP6V1H	Q9UI12	483 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520	KIAA1549	Q9HCM3	1950 aa		8.06	□□□□□ -1.12
USP4-213	ENST00000488520		A0A1B0GTH9	108 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	WASHC1	A8K0Z3	465 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	C17orf105	B2RV13	164 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	SCAMP2	O15127	329 aa	Known RBP	8.05	□□□□□ -1.12
USP4-213	ENST00000488520	TBX19	O60806	448 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	NEURL1	O76050	574 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	ANP32D	O95626	131 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF24	P17028	368 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	DNAJA1	P31689	397 aa	Known RBP	8.05	□□□□□ -1.12
USP4-213	ENST00000488520	GALNS	P34059	522 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	ADM	P35318	185 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	CLCN2	P51788	898 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	HNRNPF	P52597	415 aa	Known RBP	8.05	□□□□□ -1.12
USP4-213	ENST00000488520	IST1	P53990	364 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	UFM1	P61960	85 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	SQLE	Q14534	574 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	PTGR1	Q14914	329 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	SPDYE7P	Q495Y7	208 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	GKAP1	Q5VSY0	366 aa	Predicted RBP	8.05	□□□□□ -1.12
USP4-213	ENST00000488520	HLA-DQA1	Q5Y7H0	255 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	SCUBE1	Q8IWY4	988 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	KIF2B	Q8N4N8	673 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	MARVELD2	Q8N4S9	558 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	HORMAD2	Q8N7B1	307 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	ACBD4	Q8NC06	268 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	TMEM52	Q8NDY8	209 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	OR5L2	Q8NGL0	311 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	M1AP	Q8TC57	530 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	TSLP	Q969D9	159 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	UCN3	Q969E3	161 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	MARK4	Q96L34	752 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	CCT8L2	Q96SF2	557 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	ZNF559	Q9BR84	538 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	CNPPD1	Q9BV87	410 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	DEFB126	Q9BYW3	111 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	C12orf49	Q9H741	205 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	CES1P1	Q9UKY3	287 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	RNF6	Q9Y252	685 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	CFL2	Q9Y281	166 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	GPR45	Q9Y5Y3	372 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	DOCK7	Q96N67	2140 aa		8.05	□□□□□ -1.12
USP4-213	ENST00000488520	PRSS51	A0A1B0GVH4	220 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	FAM234B	A2RU67	622 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	CCDC154	A6NI56	674 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MYO1G	B0I1T2	1018 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	TFEC	O14948	347 aa	Predicted RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	SLC25A12	O75746	678 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	ZFAND5	O76080	213 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	PDE9A	O76083	593 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	SLITRK5	O94991	958 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	CPSF4	O95639	269 aa	Known RBP	8.04	□□□□□ -1.12
USP4-213	ENST00000488520	DRD4	P21917	467 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	PTGS2	P35354	604 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	MEOX1	P50221	254 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	ATP4B	P51164	291 aa		8.04	□□□□□ -1.12
USP4-213	ENST00000488520	NR0B1	P51843	470 aa	Known RBP	8.04	□□□□□ -1.12

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms