RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SIRT3Q9NTG7 399 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-205ENST00000465238 NTMQ9P121 344 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 OR10H1Q9Y4A9 318 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 DNAJC13O75165 2243 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 CELSR1Q9NYQ6 3014 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 EML6Q6ZMW3 1958 aa16.26■□□□□ 0.19
COL7A1-205ENST00000465238 TP53I11O14683 189 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 TO15178 435 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 CDC40O60508 579 aaKnown RBP eCLIP16.25■□□□□ 0.19
COL7A1-205ENST00000465238 SCN2BO60939 215 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 CT45A8P0DMV1 189 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 CT45A9P0DMV2 189 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 NAGAP17050 411 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 ABCD3P28288 659 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 KRT20P35900 424 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 MRPL19P49406 292 aaKnown RBP16.25■□□□□ 0.19
COL7A1-205ENST00000465238 ATP4BP51164 291 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 POLR2JP52435 117 aaKnown RBP16.25■□□□□ 0.19
COL7A1-205ENST00000465238 CORO7P57737 925 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 LRRC74AQ0VAA2 488 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 PLCXD2Q0VAA5 305 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 VPS26BQ4G0F5 336 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 CT45A2Q5DJT8 189 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 SLC22A10Q63ZE4 541 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 CD163Q86VB7 1156 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 OR56A1Q8NGH5 318 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 SFXN5Q8TD22 340 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 ZNF317Q96PQ6 595 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-205ENST00000465238 BTNL2Q9UIR0 455 aa16.25■□□□□ 0.19
COL7A1-205ENST00000465238 ANKRD17O75179 2603 aaKnown RBP16.24■□□□□ 0.19
COL7A1-205ENST00000465238 FAM234BA2RU67 622 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 REM1O75628 298 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 PPM1BO75688 479 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 P04436 131 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 PRIM2P49643 509 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 RPP38P78345 283 aaKnown RBP16.24■□□□□ 0.19
COL7A1-205ENST00000465238 SF3A3Q12874 501 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL7A1-205ENST00000465238 TP53BP2Q13625 1128 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 SQLEQ14534 574 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 NTRK2Q16620 822 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 METTL21CQ5VZV1 264 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 TMEM211Q6ICI0 200 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 CGB2Q6NT52 195 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 ZCCHC12Q6PEW1 402 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 BHLHB9Q6PI77 547 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 NPSR1Q6W5P4 371 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 CDRT4Q8N9R6 151 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 OR5M3Q8NGP4 307 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 OR9I1Q8NGQ6 314 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 OMA1Q96E52 524 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 C14orf79Q96F83 325 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 CHMP6Q96FZ7 201 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 LMF2Q9BU23 707 aaKnown RBP16.24■□□□□ 0.19
COL7A1-205ENST00000465238 ENKD1Q9H0I2 346 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 TP63Q9H3D4 680 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-205ENST00000465238 RABEP2Q9H5N1 569 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 Q9N2J8 555 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 SACM1LQ9NTJ5 587 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 DEPPQ9NTK1 212 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 F8P00451 2351 aa16.24■□□□□ 0.19
COL7A1-205ENST00000465238 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 ACOT7O00154 380 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 HMGN2P05204 90 aaKnown RBP16.23■□□□□ 0.19
COL7A1-205ENST00000465238 ALOX5P09917 674 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 CNR1P21554 472 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 GABRA3P34903 492 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 GYS2P54840 703 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 FBXW4P57775 412 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 PSG6Q00889 435 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 CYP27C1Q4G0S4 372 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 MFSD12Q6NUT3 480 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 NUP54Q7Z3B4 507 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 WDR53Q7Z5U6 358 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-205ENST00000465238 ACBD4Q8NC06 268 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 OR2M7Q8NG81 312 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 OR10G3Q8NGC4 313 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 OR52N2Q8NGI0 321 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 OR5AK3PQ8NH89 298 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 GPR151Q8TDV0 419 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 ASB5Q8WWX0 329 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 SLC9A6Q92581 669 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 JADE3Q92613 823 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 TMBIM1Q969X1 311 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 GIMAP5Q96F15 307 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 C16orf58Q96GQ5 468 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 CCDC115Q96NT0 180 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 PANX1Q96RD7 426 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 RMND5AQ9H871 391 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 CNIH4Q9P003 139 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 KLHL14Q9P2G3 628 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 MRTO4Q9UKD2 239 aaKnown RBP16.23■□□□□ 0.19
COL7A1-205ENST00000465238 FAF1Q9UNN5 650 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-205ENST00000465238 EXPH5Q8NEV8 1989 aa16.23■□□□□ 0.19
COL7A1-205ENST00000465238 NINQ8N4C6 2090 aa16.22■□□□□ 0.19
COL7A1-205ENST00000465238 RNF103-CHMP3A0A140T963 221 aa16.22■□□□□ 0.19
COL7A1-205ENST00000465238 KRT16P08779 473 aa16.22■□□□□ 0.19
COL7A1-205ENST00000465238 CCL3P10147 92 aa16.22■□□□□ 0.19
COL7A1-205ENST00000465238 UQCRC2P22695 453 aa16.22■□□□□ 0.19
COL7A1-205ENST00000465238 IL12BP29460 328 aa16.22■□□□□ 0.19
COL7A1-205ENST00000465238 PPIAP62937 165 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms