RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RPS3AP61247 264 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 MRPS35P82673 323 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 SRYQ05066 204 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 BTKQ06187 659 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 C17orf67Q0P5P2 114 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 LTB4RQ15722 352 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 BRICD5Q6PL45 260 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 TRIM46Q7Z4K8 759 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ADGRE4PQ86SQ3 457 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 C17orf53Q8N3J3 647 aaPredicted RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 CCNYL1Q8N7R7 359 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 NOA1Q8NC60 698 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 OR9A2Q8NGT5 310 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 CEP70Q8NHQ1 597 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ZFP28Q8NHY6 868 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 UHMK1Q8TAS1 419 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS41-208ENST00000448833 KAT2AQ92830 837 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 INTS12Q96CB8 462 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 C11orf24Q96F05 449 aaPredicted RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 VSTM2LQ96N03 204 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 TMEM237Q96Q45 408 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 HBEGFQ99075 208 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 TUBA1CQ9BQE3 449 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 PIGQQ9BRB3 760 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ACPTQ9BZG2 426 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 FOLH1BQ9HBA9 442 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 GALNT9Q9HCQ5 603 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 NEUROD4Q9HD90 331 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 MID1IP1Q9NPA3 183 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 MYNNQ9NPC7 610 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 DDX18Q9NVP1 670 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 FAM120CQ9NX05 1096 aaKnown RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 ELOVL5Q9NYP7 299 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ZNF226Q9NYT6 803 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 HEY2Q9UBP5 337 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 ZNF225Q9UK10 706 aa6.42□□□□□ -1.38
VPS41-208ENST00000448833 C19orf53Q9UNZ5 99 aaPredicted RBP6.42□□□□□ -1.38
VPS41-208ENST00000448833 A0A1B0GTL3 188 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 SLC22A20A6NK97 555 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 FAM171A2A8MVW0 826 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 A8MXE2 369 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 SLC28A1O00337 649 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZIC3O60481 467 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 SEC22BO75396 215 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 RSL1D1O76021 490 aaKnown RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 UROSP10746 265 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZNF708P17019 499 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ECHS1P30084 290 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 EVI2BP34910 448 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 LHX2P50458 406 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 NCBP2P52298 156 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS41-208ENST00000448833 CORO7P57737 925 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 RAE1P78406 368 aaKnown RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZNF155Q12901 538 aaPredicted RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 SLC29A2Q14542 456 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 DEFB113Q30KQ7 82 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 SHEQ5VZ18 495 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 GTF2IRD2BQ6EKJ0 949 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 DESI1Q6ICB0 168 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 NOXRED1Q6NXP6 359 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZCCHC12Q6PEW1 402 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 PAMR1Q6UXH9 720 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZYG11AQ6WRX3 759 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 RPS27LQ71UM5 84 aaKnown RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 GTF2IRD2Q86UP8 949 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 OR2L13Q8N349 312 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 NATD1Q8N6N6 113 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 C9orf106Q8NAJ2 232 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 RNF138Q8WVD3 245 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 PIGTQ969N2 578 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 GFM2Q969S9 779 aaKnown RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 ELP4Q96EB1 424 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 APIPQ96GX9 242 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZNF764Q96H86 408 aaPredicted RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 TRMOQ9BU70 441 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 TBL1XR1Q9BZK7 514 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 BEX4Q9NWD9 120 aaPredicted RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 GALNT8Q9NY28 637 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 CLCF1Q9UBD9 225 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 TMED5Q9Y3A6 229 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 ZNF175Q9Y473 711 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 TIMM22Q9Y584 194 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 AP4B1Q9Y6B7 739 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 PRRC2AP48634 2157 aaKnown RBP6.41□□□□□ -1.38
VPS41-208ENST00000448833 MED12Q93074 2177 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 AKAP6Q13023 2319 aa6.41□□□□□ -1.38
VPS41-208ENST00000448833 HEATR5AQ86XA9 2040 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 A0A087WZY1 265 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 UQCRHLA0A096LP55 91 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 NPIPB8E9PQR5 432 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 GOLGA8RI6L899 631 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 EMC8O43402 210 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 HCRTR2O43614 444 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FADS1O60427 444 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 SMNDC1O75940 238 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS41-208ENST00000448833 IL33O95760 270 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 JUNP05412 331 aaKnown RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 PRPS2P11908 318 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 NEFHP12036 1026 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms