RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 EML4Q9HC35 981 aaKnown RBP7.07□□□□□ -1.28
CD44-211ENST00000442151 MYNNQ9NPC7 610 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 SERHLQ9NQF3 203 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 DDX18Q9NVP1 670 aaKnown RBP7.07□□□□□ -1.28
CD44-211ENST00000442151 ELOVL5Q9NYP7 299 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 ST6GALNAC2Q9UJ37 374 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 C19orf53Q9UNZ5 99 aaPredicted RBP7.07□□□□□ -1.28
CD44-211ENST00000442151 ABCA12Q86UK0 2595 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 A0A087WZY1 265 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 COPEO14579 308 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ARHGEF9O43307 516 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 RAF1P04049 648 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CPA3P15088 417 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 GRK2P25098 689 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 MAPK1P28482 360 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 GPC1P35052 558 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ASMTP46597 345 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF136P52737 540 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 IST1P53990 364 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF155Q12901 538 aaPredicted RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 KEAP1Q14145 624 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 SLC29A2Q14542 456 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 FNDC7Q5VTL7 733 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 LRIG3Q6UXM1 1119 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 R3HCC1LQ7Z5L2 792 aaKnown RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 MISPQ8IVT2 679 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 KAT2AQ92830 837 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 GFM2Q969S9 779 aaKnown RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 APIPQ96GX9 242 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 VSTM2LQ96N03 204 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TMEM237Q96Q45 408 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 PRPF18Q99633 342 aaKnown RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 GPATCH1Q9BRR8 931 aaKnown RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 ACPTQ9BZG2 426 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 FAM120CQ9NX05 1096 aaKnown RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF226Q9NYT6 803 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CRIM1Q9NZV1 1036 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 PACSIN3Q9UKS6 424 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CBLCQ9ULV8 474 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TMED5Q9Y3A6 229 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF175Q9Y473 711 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 AP4B1Q9Y6B7 739 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 DNAJC13O75165 2243 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 NINQ8N4C6 2090 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 EML6Q6ZMW3 1958 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF407Q9C0G0 2248 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 FAM171A2A8MVW0 826 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 PPP6CO00743 305 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 SEC22BO75396 215 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TNFRSF21O75509 655 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 IL33O95760 270 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 KRT16P08779 473 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CT45A8P0DMV1 189 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CT45A9P0DMV2 189 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 PRPS2P11908 318 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 FCGR2AP12318 317 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 HK1P19367 917 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TACR1P25103 407 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 EVI2BP34910 448 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 SRYQ05066 204 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 NNATQ16517 81 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CT45A2Q5DJT8 189 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 BICRALQ6AI39 1079 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 FAM71E1Q6IPT2 247 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 NOXRED1Q6NXP6 359 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 RNF165Q6ZSG1 346 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 SEM1Q6ZVN7 128 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CDC20BQ86Y33 519 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TDRPQ86YL5 185 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TGIF2LYQ8IUE0 185 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 RIBC1Q8N443 379 aaPredicted RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 WDSUB1Q8N9V3 476 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 RELL2Q8NC24 303 aaPredicted RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 OR9A2Q8NGT5 310 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CDC26Q8NHZ8 85 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 UBLCP1Q8WVY7 318 aaPredicted RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 SMPDL3BQ92485 455 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 MTERF3Q96E29 417 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ZBED6CLQ96FA7 236 aaPredicted RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF764Q96H86 408 aaPredicted RBP7.06□□□□□ -1.28
CD44-211ENST00000442151 ALPK1Q96QP1 1244 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CCT7Q99832 543 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TUBA1CQ9BQE3 449 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 PRRG4Q9BZD6 226 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TBL1XR1Q9BZK7 514 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 CXXC4Q9H2H0 198 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 NEUROD4Q9HD90 331 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 C1orf109Q9NX04 203 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 JKAMPQ9P055 326 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 HEY2Q9UBP5 337 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 ZNF225Q9UK10 706 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 TIMM22Q9Y584 194 aa7.06□□□□□ -1.28
CD44-211ENST00000442151 LRBAP50851 2863 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 C2CD3Q4AC94 2353 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 ARHGAP21Q5T5U3 1957 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 CLCA1A8K7I4 914 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 TMEM114B3SHH9 223 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 NPIPB8E9PQR5 432 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 TBX19O60806 448 aa7.05□□□□□ -1.28
CD44-211ENST00000442151 SBK3P0C264 359 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms