RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 NUP54Q7Z3B4 507 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 GALNTL5Q7Z4T8 443 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 MTDHQ86UE4 582 aaKnown RBP11.4□□□□□ -0.58
USP40-205ENST00000430158 SULF2Q8IWU5 870 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 FBXW8Q8N3Y1 598 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 HORMAD2Q8N7B1 307 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 ANKS4BQ8N8V4 417 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 FBXO30Q8TB52 745 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 DIO2Q92813 273 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 CDS1Q92903 461 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 AURKBQ96GD4 344 aaPredicted RBP11.4□□□□□ -0.58
USP40-205ENST00000430158 FRMD6Q96NE9 622 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 OR7D2Q96RA2 312 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 BTBD2Q9BX70 525 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 RMND5AQ9H871 391 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 Q9N2J8 555 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 TIMMDC1Q9NPL8 285 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 KLHL1Q9NR64 748 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 FLRT3Q9NZU0 649 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 VAPAQ9P0L0 249 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 ARMCX1Q9P291 453 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 VPS4AQ9UN37 437 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 FLNCQ14315 2725 aa11.4□□□□□ -0.58
USP40-205ENST00000430158 B4DXG7 233 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 B8ZZF3 427 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 NPIPB9F8W1W9 429 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 FXYD1O00168 92 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 HMGN4O00479 90 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 ASNA1O43681 348 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 PEX1O43933 1283 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 FADS1O60427 444 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CCDC22O60826 627 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 REM1O75628 298 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 SOX30O94993 753 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 UNC5CO95185 931 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 ALOX5P09917 674 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CYP4B1P13584 511 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CD46P15529 392 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CNR1P21554 472 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 MATN1P21941 496 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CASP3P42574 277 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 MAGEA8P43361 318 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CASP9P55211 416 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 ZNHIT3Q15649 155 aaPredicted RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 INAQ16352 499 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP40-205ENST00000430158 FNDC7Q5VTL7 733 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 SLC22A10Q63ZE4 541 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 BICRALQ6AI39 1079 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 BHLHB9Q6PI77 547 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 DNAJC14Q6Y2X3 702 aaPredicted RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 RNF130Q86XS8 419 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 C10orf111Q8N326 155 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 ZFP62Q8NB50 900 aaPredicted RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 CHDHQ8NE62 594 aaPredicted RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 OR5D16Q8NGK9 328 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 GPR151Q8TDV0 419 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 GRHL3Q8TE85 626 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 SLC9A6Q92581 669 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 EFHD2Q96C19 240 aaPredicted RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 SNRNP40Q96DI7 357 aaKnown RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 SLC35G5Q96KT7 338 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 C5orf34Q96MH7 638 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 COL21A1Q96P44 957 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 ADOQ96SZ5 270 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 SDF2Q99470 211 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 ANGPTL4Q9BY76 406 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 RTN4RQ9BZR6 473 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 OR51I1Q9H343 314 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 IKZF5Q9H5V7 419 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 TPT1P8Q9HAU6 139 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 MRGBPQ9NV56 204 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CNIH4Q9P003 139 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 LEF1Q9UJU2 399 aaPredicted RBP11.39□□□□□ -0.59
USP40-205ENST00000430158 ARL2BPQ9Y2Y0 163 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 HRH3Q9Y5N1 445 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 CAPN7Q9Y6W3 813 aa11.39□□□□□ -0.59
USP40-205ENST00000430158 C3orf80F5H4A9 247 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 TRIM3O75382 744 aaPredicted RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 GLSO94925 669 aaPredicted RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 GUSBP08236 651 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 KRT16P08779 473 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 BMP2P12643 396 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 TMED10P49755 219 aaKnown RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 INPP5JQ15735 1006 aaPredicted RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 DECR1Q16698 335 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 HYAL4Q2M3T9 481 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 RUNDC3AQ59EK9 446 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 COQ5Q5HYK3 327 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 C6orf10Q5SRN2 563 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 FAM91A1Q658Y4 838 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 TNFAIP8L2Q6P589 184 aaPredicted RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 APOOLQ6UXV4 268 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 SZRD1Q7Z422 152 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 SNX32Q86XE0 403 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 SIAH3Q8IW03 269 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 CISD2Q8N5K1 135 aaKnown RBP11.38□□□□□ -0.59
USP40-205ENST00000430158 TRIML2Q8N7C3 387 aa11.38□□□□□ -0.59
USP40-205ENST00000430158 TMEM178AQ8NBL3 297 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms