RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PIGUQ9H490 435 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 ZNF835Q9Y2P0 537 aa19.87■□□□□ 0.77
CLN3-207ENST00000395653 C9JVG2 144 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 CDC40O60508 579 aaKnown RBP eCLIP19.86■□□□□ 0.77
CLN3-207ENST00000395653 SLC19A2O60779 497 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 IL6P05231 212 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 RFPL3SP0C7P2 107 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 IRX1P78414 480 aaPredicted RBP19.86■□□□□ 0.77
CLN3-207ENST00000395653 HSF1Q00613 529 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 ARHGAP11AQ6P4F7 1023 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 ZGRF1Q86YA3 2104 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 COX18Q8N8Q8 333 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 GOT1L1Q8NHS2 421 aaPredicted RBP19.86■□□□□ 0.77
CLN3-207ENST00000395653 OR52E6Q96RD3 313 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 YIPF4Q9BSR8 244 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 GALNT9Q9HCQ5 603 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 FAF1Q9UNN5 650 aaPredicted RBP19.86■□□□□ 0.77
CLN3-207ENST00000395653 ABCG2Q9UNQ0 655 aa19.86■□□□□ 0.77
CLN3-207ENST00000395653 RNF103-CHMP3A0A140T963 221 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 SNPHO15079 494 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 CPSF4O95639 269 aaKnown RBP19.85■□□□□ 0.77
CLN3-207ENST00000395653 EVI2BP34910 448 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 STX1BP61266 288 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 SLC10A1Q14973 349 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 C4orf17Q53FE4 359 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 TIGD3Q6B0B8 471 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 ANGPTL8Q6UXH0 198 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 Q6ZPB1 254 aaPredicted RBP19.85■□□□□ 0.77
CLN3-207ENST00000395653 C6orf120Q7Z4R8 191 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 SPPL2CQ8IUH8 684 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 FAM110BQ8TC76 370 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 UBQLN3Q9H347 655 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 SLC5A6Q9Y289 635 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 C15orf41Q9Y2V0 281 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 WIF1Q9Y5W5 379 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 HIVEP3Q5T1R4 2406 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 LRRK2Q5S007 2527 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 USP9XQ93008 2570 aaPredicted RBP19.85■□□□□ 0.77
CLN3-207ENST00000395653 A0A1B0GTH9 108 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 KCNK2O95069 426 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 IGKV1D-16P01601 117 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 UQCRC2P22695 453 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 ZFP36L2P47974 494 aaKnown RBP19.85■□□□□ 0.77
CLN3-207ENST00000395653 RFX3P48380 749 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 MAN2A2P49641 1150 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 UBAP2LQ14157 1087 aaKnown RBP19.85■□□□□ 0.77
CLN3-207ENST00000395653 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.85■□□□□ 0.77
CLN3-207ENST00000395653 FGD2Q7Z6J4 655 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 OR1J4Q8NGS1 313 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 ADAMTS15Q8TE58 950 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 CHMP6Q96FZ7 201 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 BTBD2Q9BX70 525 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 CCDC134Q9H6E4 229 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 ACKR4Q9NPB9 350 aa19.85■□□□□ 0.77
CLN3-207ENST00000395653 A0A1B0GUH1 482 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 A0A1B0GVC2 190 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 GNB5O14775 395 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 FADS1O60427 444 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 HCN1O60741 890 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 SEMA7AO75326 666 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 PDE9AO76083 593 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 AGFG2O95081 481 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 CELA3AP09093 270 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 ABOP16442 354 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 GDF1P27539 372 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 LCN1P31025 176 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 POLR2JP52435 117 aaKnown RBP19.84■□□□□ 0.77
CLN3-207ENST00000395653 POU6F2P78424 691 aaPredicted RBP19.84■□□□□ 0.77
CLN3-207ENST00000395653 GUCY1A3Q02108 690 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 MSANTD1Q6ZTZ1 278 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 TRILQ7L0X0 811 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 OR9I1Q8NGQ6 314 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 CDS1Q92903 461 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 OTUB1Q96FW1 271 aaPredicted RBP19.84■□□□□ 0.77
CLN3-207ENST00000395653 SLC35G5Q96KT7 338 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 GNRHR2Q96P88 292 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 PANX1Q96RD7 426 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 NPHS2Q9NP85 383 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 ERRFI1Q9UJM3 462 aaPredicted RBP19.84■□□□□ 0.77
CLN3-207ENST00000395653 PCDHGB3Q9Y5G1 929 aa19.84■□□□□ 0.77
CLN3-207ENST00000395653 NINQ8N4C6 2090 aa19.83■□□□□ 0.77
CLN3-207ENST00000395653 TRGV8A0A0C4DH27 118 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 FAM234BA2RU67 622 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 LRRTM2O43300 516 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 SUSD5O60279 629 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 PTPN6P29350 595 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 PTGS2P35354 604 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 CA7P43166 264 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 GAS1P54826 345 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 CASP6P55212 293 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 C1QL3Q5VWW1 255 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 FIGNL1Q6PIW4 674 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 CLEC4FQ8N1N0 589 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 TRIML2Q8N7C3 387 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 WDSUB1Q8N9V3 476 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 MIPOL1Q8TD10 442 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 RELTQ969Z4 430 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 THOC1Q96FV9 657 aaKnown RBP19.83■□□□□ 0.76
CLN3-207ENST00000395653 OR7D2Q96RA2 312 aa19.83■□□□□ 0.76
CLN3-207ENST00000395653 G6PC3Q9BUM1 346 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms