RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 STATHP02808 62 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ARAFP10398 606 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 FOLR1P15328 257 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 SPNP16150 400 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 SOAT1P35610 550 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ETV6P41212 452 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 CASP9P55211 416 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 NPRL3Q12980 569 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 HEPACAMQ14CZ8 416 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 TMEM236Q5W0B7 351 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ADCK2Q7Z695 626 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 UBE3DQ7Z6J8 389 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 TSEN54Q7Z6J9 526 aaKnown RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 UBQLNLQ8IYU4 475 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 OR5AK3PQ8NH89 298 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 MCFD2Q8NI22 146 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 CREB3L4Q8TEY5 395 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 OR5P2Q8WZ92 322 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 TM4SF18Q96CE8 201 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ZNF764Q96H86 408 aaPredicted RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 F2RL3Q96RI0 385 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 SARGQ9BW04 601 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 DUSP21Q9H596 190 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 SYNPO2LQ9H987 977 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ABCB10Q9NRK6 738 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ADAM29Q9UKF5 820 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ACSL6Q9UKU0 697 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 LOXL2Q9Y4K0 774 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 LYVE1Q9Y5Y7 322 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 A0A0J9YY10 115 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 EFCAB7A8K855 629 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ATXN8OSP0DMR3 200 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 CSTF2P33240 577 aaKnown RBP eCLIP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ETV5P41161 510 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 HTR3AP46098 478 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 PCBP3P57721 371 aaKnown RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 DEFA1P59665 94 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 DEFA3P59666 94 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 DSTNP60981 165 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 CYP4F2P78329 520 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 MAD2L1BPQ15013 274 aaPredicted RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 GPR19Q15760 415 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 NPTX1Q15818 432 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ZNF404Q494X3 552 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 PRAMEF17Q5VTA0 474 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 UBE2UQ5VVX9 321 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 FCRL6Q6DN72 434 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 FAAH2Q6GMR7 532 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 FIGLAQ6QHK4 219 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 CCBE1Q6UXH8 406 aaPredicted RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 GEMIN6Q8WXD5 167 aaKnown RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 RGMAQ96B86 450 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 SLC22A18Q96BI1 424 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 AICDAQ9GZX7 198 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 ZNF768Q9H5H4 540 aaKnown RBP13.36□□□□□ -0.27
HMGA1-203ENST00000374116 CCNB1IP1Q9NPC3 277 aa13.36□□□□□ -0.27
HMGA1-203ENST00000374116 MDC1Q14676 2089 aaKnown RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 MED19A0JLT2 244 aaPredicted RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 A8MVJ9 347 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 XPNPEP2O43895 674 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CTSVO60911 334 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CLEC3AO75596 197 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 TPPPO94811 219 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 OPN1SWP03999 348 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 ANXA8P13928 327 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CMPK1P30085 196 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 FMO3P31513 532 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CCKBRP32239 447 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 IFNA8P32881 189 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 MLLT3P42568 568 aaPredicted RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 ARL4DP49703 201 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 ST13P50502 369 aaKnown RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 VBP1P61758 197 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CSNK2BP67870 215 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 RPP38P78345 283 aaKnown RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 SLC35A2P78381 396 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 PIGFQ07326 219 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 RAB11FIP2Q7L804 512 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 PRSS42Q7Z5A4 293 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 NUDT13Q86X67 352 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 MMP21Q8N119 569 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 C19orf47Q8N9M1 422 aaKnown RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 MARVELD3Q96A59 401 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 NEURL3Q96EH8 262 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 HRASLS5Q96KN8 279 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CCDC90BQ9GZT6 254 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 CXorf36Q9H7Y0 433 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 DDX31Q9H8H2 851 aaKnown RBP13.35□□□□□ -0.27
HMGA1-203ENST00000374116 STARD5Q9NSY2 213 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 PISDQ9UG56 409 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 WASF3Q9UPY6 502 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 PCDHGA10Q9Y5H3 936 aa13.35□□□□□ -0.27
HMGA1-203ENST00000374116 TRBC2A0A5B9 178 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 RTCAO00442 366 aaKnown RBP13.34□□□□□ -0.27
HMGA1-203ENST00000374116 PDPK1O15530 556 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 NDUFS4O43181 175 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 TBX1O43435 398 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 OR1F1O43749 312 aa13.34□□□□□ -0.27
HMGA1-203ENST00000374116 FRKP42685 505 aaPredicted RBP13.34□□□□□ -0.27
HMGA1-203ENST00000374116 MANFP55145 182 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms