RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 WASH6PQ9NQA3 447 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 SIRT4Q9Y6E7 314 aaPredicted RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 GSAPA4D1B5 854 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 LEUTXA8MZ59 168 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 CHST10O43529 356 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 CHP2O43745 196 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 EFCAB14O75071 495 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 IGHA1P01876 353 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 EIF4EP06730 217 aaKnown RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 IFNGR2P38484 337 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 TAS2R38P59533 333 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 ZNF311Q5JNZ3 666 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 SLC38A6Q8IZM9 456 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 OR51G2Q8NGK0 314 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 OR52N1Q8NH53 320 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 HYLS1Q96M11 299 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 FCRL4Q96PJ5 515 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 HMX1Q9NP08 348 aaPredicted RBP15.35■□□□□ 0.05
SDC4-201ENST00000372733 TM7SF3Q9NS93 570 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 MAT2BQ9NZL9 334 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 PTGFRNQ9P2B2 879 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 PCDH10Q9P2E7 1040 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 NCKAP1Q9Y2A7 1128 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 HCFC2Q9Y5Z7 792 aa15.35■□□□□ 0.05
SDC4-201ENST00000372733 TRAV6A0A075B6T7 132 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 A0A0A6YYD5 115 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 C17orf113A0A1B0GUU1 675 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 ZC3H12DA2A288 527 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 CASC3O15234 703 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 LZTS3O60299 673 aaPredicted RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 C8orf89P0DMQ9 161 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 NTSP30990 170 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 ATP12AP54707 1039 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 MLC1Q15049 377 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 PGGHGQ32M88 737 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 PLA1AQ53H76 456 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 FAM27D1Q5T7N8 215 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 TMEM107Q6UX40 140 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 RRM2BQ7LG56 351 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 TBX5Q99593 518 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 POLMQ9NP87 494 aaPredicted RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 ATP13A2Q9NQ11 1180 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 HINT3Q9NQE9 182 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 ASB6Q9NWX5 421 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 ASB4Q9Y574 426 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 LILRB3O75022 631 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 RGS9O75916 674 aaPredicted RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 SDHBP21912 280 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 CFL1P23528 166 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 FAM46CQ5VWP2 391 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 OR4C11Q6IEV9 310 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 KIAA0907Q7Z7F0 614 aaPredicted RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 SIX5Q8N196 739 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 RFT1Q96AA3 541 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 ARRDC3Q96B67 414 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 ZNF764Q96H86 408 aaPredicted RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 TRMT61BQ9BVS5 477 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 ABCG5Q9H222 651 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 PPIL3Q9H2H8 161 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 ENAMQ9NRM1 1142 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 IMP3Q9NV31 184 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 TNFRSF10DQ9UBN6 386 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 SLC13A4Q9UKG4 626 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 CBLCQ9ULV8 474 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 CHST2Q9Y4C5 530 aa15.34■□□□□ 0.05
SDC4-201ENST00000372733 GOLGA4Q13439 2230 aaKnown RBP15.34■□□□□ 0.05
SDC4-201ENST00000372733 A0A1W2PPV9 198 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 C4orf51C9J302 202 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 PGRMC2O15173 223 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 EEF1E1O43324 174 aaKnown RBP15.33■□□□□ 0.05
SDC4-201ENST00000372733 RNF13O43567 381 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 ERGP11308 486 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 HK1P19367 917 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 HTR1FP30939 366 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 BTCP35070 178 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 DEFB103AP81534 67 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 SMARCD3Q6STE5 483 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 FAM20CQ8IXL6 584 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 NRMQ8IXM6 262 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 CCDC116Q8IYX3 515 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 SAMD12Q8N8I0 201 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 ZNF514Q96K75 400 aaPredicted RBP15.33■□□□□ 0.05
SDC4-201ENST00000372733 THAP7Q9BT49 309 aaPredicted RBP15.33■□□□□ 0.05
SDC4-201ENST00000372733 MED28Q9H204 178 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 SLC38A1Q9H2H9 487 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 KLHL31Q9H511 634 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 NUDT15Q9NV35 164 aa15.33■□□□□ 0.05
SDC4-201ENST00000372733 EXOGQ9Y2C4 368 aaKnown RBP15.33■□□□□ 0.05
SDC4-201ENST00000372733 A0A0G2JPF8 293 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 HNRNPCL2B2RXH8 293 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 HNRNPCL3B7ZW38 293 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 HNRNPCL4P0DMR1 293 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 GAAP10253 952 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 OR10A3P58181 314 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 ACSM1Q08AH1 577 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 ESCO2Q56NI9 601 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 ZNF697Q5TEC3 545 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 CPOQ8IVL8 374 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 KREMEN2Q8NCW0 462 aa15.33■□□□□ 0.04
SDC4-201ENST00000372733 OR11H7Q8NGC8 314 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms