RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MAFIPQ8WZ33 124 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 PGAM5Q96HS1 289 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 SFXN1Q9H9B4 322 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 SMAD6O43541 496 aaKnown RBP10.82□□□□□ -0.68
PTPRF-203ENST00000372407 UPK1BO75841 260 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 AMY2BP19961 511 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 NTSR1P30989 418 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 ZER1Q7Z7L7 766 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 TMEM173Q86WV6 379 aaPredicted RBP10.82□□□□□ -0.68
PTPRF-203ENST00000372407 PDZD9Q8IXQ8 264 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 FTMTQ8N4E7 242 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 ACPTQ9BZG2 426 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 PPP4R1LQ9P1A2 415 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 KLHL21Q9UJP4 597 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 ERVK-19Q9WJR5 959 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 BCORQ6W2J9 1755 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 KIAA0355O15063 1070 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 MAS1P04201 325 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 CDK4P11802 303 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 JUNDP17535 347 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 VIPR2P41587 438 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 KCNJ5P48544 419 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF140P52738 457 aaPredicted RBP10.82□□□□□ -0.68
PTPRF-203ENST00000372407 FGFBP1Q14512 234 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 GRM7Q14831 915 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 FAM180BQ6P0A1 224 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 MDGA1Q8NFP4 955 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 MFSD8Q8NHS3 518 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 CREB3L4Q8TEY5 395 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 NINJ1Q92982 152 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 FAM46BQ96A09 425 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 SLC25A44Q96H78 314 aaPredicted RBP10.82□□□□□ -0.68
PTPRF-203ENST00000372407 TOX2Q96NM4 488 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 HOXD1Q9GZZ0 328 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 ZBTB20Q9HC78 741 aaPredicted RBP10.82□□□□□ -0.68
PTPRF-203ENST00000372407 CSNK1G1Q9HCP0 422 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 PARPBPQ9NWS1 579 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 APOBEC3BQ9UH17 382 aaKnown RBP10.82□□□□□ -0.68
PTPRF-203ENST00000372407 ASB4Q9Y574 426 aa10.82□□□□□ -0.68
PTPRF-203ENST00000372407 CASC3O15234 703 aaKnown RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 DDCP20711 480 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 NKX2-5P52952 324 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 MPP7Q5T2T1 576 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 NEIL2Q969S2 332 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 MEPEQ9NQ76 525 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 MRPL15Q9P015 296 aaKnown RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 OR1A2Q9Y585 309 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 VSTM2BA6NLU5 285 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CENPBD1B2RD01 187 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TGM5O43548 720 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 NPR2P20594 1047 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ADH6P28332 368 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 UQCRC1P31930 480 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 RORAP35398 523 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ARL6IP1Q15041 203 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 RAB11BQ15907 218 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TAZQ16635 292 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 BCL2L15Q5TBC7 163 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ANKRD54Q6NXT1 300 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 C3orf33Q6P1S2 294 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CYB561A3Q8NBI2 242 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 OR51L1Q8NGJ5 315 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 OR5L2Q8NGL0 311 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 OR5AR1Q8NGP9 310 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ARRDC2Q8TBH0 407 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 GTF2H4Q92759 462 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 DNAJA3Q96EY1 480 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TGM7Q96PF1 710 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TMEM168Q9H0V1 697 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 OR51E2Q9H255 320 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CYP8B1Q9UNU6 501 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TFAP2AP05549 437 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 PRSS3P35030 304 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 HTR2BP41595 481 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 HMBOX1Q6NT76 420 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 LEG1Q6P5S2 330 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 GPR149Q86SP6 731 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 SCGB1C1Q8TD33 95 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 THAP3Q8WTV1 239 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 MS4A4EQ96PG1 132 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 ALG8Q9BVK2 526 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 DMRT3Q9NQL9 472 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CNOT2Q9NZN8 540 aaKnown RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CNIH4Q9P003 139 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 GLS2Q9UI32 602 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 USP3Q9Y6I4 520 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 WNK3Q9BYP7 1800 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 TRAV18A0A075B6X5 111 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 KRBA1A5PL33 1030 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 IL33O95760 270 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 HMGN2P05204 90 aaKnown RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CRHBPP24387 322 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 PITPNBP48739 271 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 PTH2RP49190 550 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 EMX1Q04741 257 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 RPS26P11Q5JNZ5 115 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-203ENST00000372407 SLC18B1Q6NT16 456 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 CNIH2Q6PI25 160 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 LAS2Q8IYD9 372 aa10.81□□□□□ -0.68
PTPRF-203ENST00000372407 DEFB119Q8N690 84 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms