RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SLC22A7Q9Y694 548 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 URADA6NGE7 173 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 AP3D1O14617 1153 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 PRODHO43272 600 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 ACP2P11117 423 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 TLX1P31314 330 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 IFNA8P32881 189 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 CDC20Q12834 499 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 DUSP5Q16690 384 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 ARHGAP11BQ3KRB8 267 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 FLYWCH1Q4VC44 716 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 C3orf38Q5JPI3 329 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 LIPKQ5VXJ0 399 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC36A4Q6YBV0 504 aa19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 ACOT11Q8WXI4 607 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-203ENST00000359902 CPMP14384 443 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 CD300CQ08708 224 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 TRMT12Q53H54 448 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 PLEKHM3Q6ZWE6 761 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 GDF7Q7Z4P5 450 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 SHISA5Q8N114 240 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 CAMKVQ8NCB2 501 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 RNFT2Q96EX2 444 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 BARHL1Q9BZE3 327 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 FGF20Q9NP95 211 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 PTGFRNQ9P2B2 879 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF229Q9UJW7 825 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 MRPS2Q9Y399 296 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 WDR45Q9Y484 360 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 PCDHGB6Q9Y5F9 930 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 HYKKA2RU49 373 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 MRPS21P82921 87 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 RAB40BQ12829 278 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 CLEC12AQ5QGZ9 265 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 C11orf74Q86VG3 221 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 TMEFF1Q8IYR6 380 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 PATE1Q8WXA2 126 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 SLC41A3Q96GZ6 507 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 SLC38A2Q96QD8 506 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF232Q9UNY5 417 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 PIAS3Q9Y6X2 628 aa19.45■□□□□ 0.7
CCDC88B-203ENST00000359902 PNMA8CA0A1B0GUJ8 204 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF860A6NHJ4 632 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF670-ZNF695F2Z2N8 137 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 APOL3O95236 402 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 DRD1P21728 446 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ID2Q02363 134 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 SPANXN2Q5MJ10 180 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF836Q6ZNA1 936 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ABHD13Q7L211 337 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 TRIM48Q8IWZ4 208 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 PEX5LQ8IYB4 626 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 POC5Q8NA72 575 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ANKK1Q8NFD2 765 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 SDF2Q99470 211 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 PRDM9Q9NQV7 894 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 CRNNQ9UBG3 495 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 KLHL3Q9UH77 587 aa19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 CAB39Q9Y376 341 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 ARHGEF17Q96PE2 2063 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-203ENST00000359902 KDM4EB2RXH2 506 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 H0YGG7 62 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 KLF4O43474 513 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 OR5F1O95221 314 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 GNSP15586 552 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 CPEP16870 476 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 ALOX12P18054 663 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 FPR3P25089 353 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 STAT5AP42229 794 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 LSSP48449 732 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 ARF3P61204 181 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 YPEL5P62699 121 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF628Q5EBL2 1059 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 FHL5Q5TD97 284 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 Q6ZSR6 202 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 OR9Q1Q8NGQ5 310 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 DOK4Q8TEW6 326 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 FAM3CQ92520 227 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 ZFYVE21Q9BQ24 234 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 SIAEQ9HAT2 523 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 CPNE5Q9HCH3 593 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 SSR3Q9UNL2 185 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 C19orf53Q9UNZ5 99 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 FANCMQ8IYD8 2048 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 CENPVL1A0A0U1RR11 272 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 LRRC72A6NJI9 287 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 SNTNA6NMZ2 147 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 PVRP15151 417 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 MYL12AP19105 171 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 MTNR1AP48039 350 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 MINDY4Q4G0A6 757 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 CCNJQ5T5M9 372 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 MBOAT2Q6ZWT7 520 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 PRSS41Q7RTY9 318 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 NRMQ8IXM6 262 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 ZBTB8BQ8NAP8 495 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 OR4Q3Q8NH05 313 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 TMEM255BQ8WV15 326 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms