RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 LSM14AQ8ND56 463 aaKnown RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 OR52E1Q8NGJ3 308 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 GCDHQ92947 438 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 ZMYND19Q96E35 227 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 FRMD6Q96NE9 622 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 GAL3ST4Q96RP7 486 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 LRRN3Q9H3W5 708 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 CPNE5Q9HCH3 593 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TDRD6O60522 2096 aaKnown RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 SPEGQ15772 3267 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 FFAR1O14842 300 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 RAB36O95755 333 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 CD3GP09693 182 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 JUNDP17535 347 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 GABRA3P34903 492 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TAS2R38P59533 333 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 DCDC1P59894 354 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 GPM6BQ13491 265 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 UNC5DQ6UXZ4 953 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 DPPA4Q7L190 304 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 SFTPA2Q8IWL1 248 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 ADGRF3Q8IZF5 1079 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 OR5T3Q8NGG3 340 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 OR5M3Q8NGP4 307 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TMEM255BQ8WV15 326 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 SNX33Q8WV41 574 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TRIM43Q96BQ3 446 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 CAMK1GQ96NX5 476 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 NEUROD4Q9HD90 331 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TMEM45AQ9NWC5 275 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 SOHLH2Q9NX45 425 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 HMGN4O00479 90 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 KLHL18O94889 574 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 ARHGEF15O94989 841 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 CLDN12P56749 244 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 RBBP4Q09028 425 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 LRIT3Q3SXY7 679 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 GGTA1PQ4G0N0 100 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 MPP7Q5T2T1 576 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 FBXL6Q8N531 539 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 RERGQ96A58 199 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 PTCHD1Q96NR3 888 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 C11orf54Q9H0W9 315 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 RDH8Q9NYR8 311 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 SEC14L4Q9UDX3 406 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 GREM1O60565 184 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 CSN2P05814 226 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SLC35G6P0C7Q6 338 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 ZNF888P0CJ79 500 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 CPMP14384 443 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 XCR1P46094 333 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 VSX2P58304 361 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 SHC2P98077 582 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.22□□□□□ -0.61
USP1-201ENST00000339950 RGS1Q08116 209 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SQSTM1Q13501 440 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 KCNC3Q14003 757 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 E2F2Q14209 437 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SUZ12Q15022 739 aaKnown RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 LARS2Q15031 903 aaKnown RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 P2RY14Q15391 338 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 ATAD3CQ5T2N8 411 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SFRP4Q6FHJ7 346 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 PGBD2Q6P3X8 592 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 FRRS1Q6ZNA5 592 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 TAF8Q7Z7C8 310 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 OOSP2Q86WS3 158 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 OR13C5Q8NGS8 318 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 OR5H6Q8NGV6 325 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SLC22A4Q9H015 551 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 BRF2Q9HAW0 419 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 FBXO8Q9NRD0 319 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 OSGIN1Q9UJX0 560 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 HCN2Q9UL51 889 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 MAPRE3Q9UPY8 281 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 GPR55Q9Y2T6 319 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 TPRP12270 2363 aaKnown RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 LOC100509620A0A075B734 347 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 OR6C74A6NCV1 312 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 AIFM1O95831 613 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SYPP08247 313 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 CMPK1P30085 196 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SSX1Q16384 188 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 TP53I3Q53FA7 332 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 BCL2L15Q5TBC7 163 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 FAHD1Q6P587 224 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 SHISA5Q8N114 240 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 ARL14Q8N4G2 192 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 GALNT6Q8NCL4 622 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 C9orf43Q8TAL5 461 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 HERVK_113Q902F9 699 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 ZBP1Q9H171 429 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 TXNL4BQ9NX01 149 aaKnown RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 RABL2AQ9UBK7 228 aaPredicted RBP11.22□□□□□ -0.61
USP1-201ENST00000339950 FAAHO00519 579 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 DVL2O14641 736 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 MPZL2O60487 215 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 HBQ1P09105 142 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 HSD3B1P14060 373 aa11.22□□□□□ -0.61
USP1-201ENST00000339950 HSD3B2P26439 372 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms