RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 COLEC12Q5KU26 742 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 TTC23Q5W5X9 447 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 PEX5LQ8IYB4 626 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 AGBL5Q8NDL9 886 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 OR6T1Q8NGN1 323 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 GIPC3Q8TF64 312 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 ATOH1Q92858 354 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-202ENST00000338045 FKBP10Q96AY3 582 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 SENP5Q96HI0 755 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-202ENST00000338045 VN1R1Q9GZP7 353 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 FBXO34Q9NWN3 711 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 FAM118AQ9NWS6 357 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 FTSJ1Q9UET6 329 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 A4GNTQ9UNA3 340 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF443Q9Y2A4 671 aaPredicted RBP14.36□□□□□ -0.11
LIMS1-202ENST00000338045 NINQ8N4C6 2090 aa14.36□□□□□ -0.11
LIMS1-202ENST00000338045 ARRDC5A6NEK1 342 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 CT45A8P0DMV1 189 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 CT45A9P0DMV2 189 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 TNNI3P19429 210 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 GANABQ14697 944 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 CT45A2Q5DJT8 189 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 MFSD4BQ5TF39 518 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 KRT80Q6KB66 452 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 NPSR1Q6W5P4 371 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 DEF8Q6ZN54 512 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 LAPTM4BQ86VI4 370 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 TMEM151BQ8IW70 566 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 PIK3C3Q8NEB9 887 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 OR10G2Q8NGC3 310 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 OR52J3Q8NH60 311 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 PHF10Q8WUB8 498 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 NMNAT1Q9HAN9 279 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 APMAPQ9HDC9 416 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 PNO1Q9NRX1 252 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 PNPLA3Q9NST1 481 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 PRODH2Q9UF12 536 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 ORC6Q9Y5N6 252 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF318Q5VUA4 2279 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 EIF4E1BA6NMX2 242 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 EFCAB7A8K855 629 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 SLC16A6O15403 523 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 MITFO75030 526 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 CLIC3O95833 236 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 IGKV3-11P04433 115 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 DBIP07108 87 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 ATXN8OSP0DMR3 200 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 ITGAMP11215 1152 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 PIGAP37287 484 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 EEF1A1P68104 462 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 DCDP81605 110 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 LARS2Q15031 903 aaKnown RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 GPR68Q15743 365 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 NPTX1Q15818 432 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 FIGNL1Q6PIW4 674 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 CLIP4Q8N3C7 705 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 ATG16L2Q8NAA4 619 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 SUMF1Q8NBK3 374 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 STT3BQ8TCJ2 826 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 RMND5BQ96G75 393 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 FUZQ9BT04 418 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF696Q9H7X3 374 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 SLC24A3Q9HC58 644 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 RHCGQ9UBD6 479 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 SCOCQ9UIL1 159 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 KCNE5Q9UJ90 142 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 MKL2Q9ULH7 1088 aa14.35□□□□□ -0.11
LIMS1-202ENST00000338045 GPR55Q9Y2T6 319 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-202ENST00000338045 CENPVL1A0A0U1RR11 272 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 AGRPO00253 132 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 PCDH17O14917 1159 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 DYRK3O43781 588 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 TNFAIP8O95379 198 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 DDAH2O95865 285 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 ZGLP1P0C6A0 271 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 ANXA8P13928 327 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 SLC37A1P57057 533 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 SMIM11AP58511 58 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 SF3A2Q15428 464 aaKnown RBP14.34□□□□□ -0.11
LIMS1-202ENST00000338045 NSDHLQ15738 373 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 MAPK14Q16539 360 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 TMEM154Q6P9G4 183 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 ZAR1Q86SH2 424 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 TSPYL5Q86VY4 417 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-202ENST00000338045 ZSCAN1Q8NBB4 408 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 CLIP3Q96DZ5 547 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 PRRC1Q96M27 445 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 ALPK1Q96QP1 1244 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 FEVQ99581 238 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 CACYBPQ9HB71 228 aaKnown RBP14.34□□□□□ -0.11
LIMS1-202ENST00000338045 BATF3Q9NR55 127 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 C14orf105Q9NVL8 296 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 KLHL28Q9NXS3 571 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 KIF17Q9P2E2 1029 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 SLC13A4Q9UKG4 626 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 CLCA3PQ9Y6N3 262 aa14.34□□□□□ -0.11
LIMS1-202ENST00000338045 COL27A1Q8IZC6 1860 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-202ENST00000338045 A0A1W2PRQ8 180 aa14.33□□□□□ -0.11
LIMS1-202ENST00000338045 PRR33A8MZF0 331 aa14.33□□□□□ -0.11
LIMS1-202ENST00000338045 E9PQ18 207 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms