RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SZRD1Q7Z422 152 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 CLHC1Q8NHS4 586 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 CIDECQ96AQ7 238 aaPredicted RBP17.71■□□□□ 0.43
LIME1-201ENST00000309546 TSSK3Q96PN8 268 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 DSN1Q9H410 356 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 ANKZF1Q9H8Y5 726 aa17.71■□□□□ 0.43
LIME1-201ENST00000309546 FOXD3Q9UJU5 478 aaPredicted RBP17.71■□□□□ 0.43
LIME1-201ENST00000309546 TEP1Q99973 2627 aaKnown RBP17.7■□□□□ 0.42
LIME1-201ENST00000309546 B4DXG7 233 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 CTAG2O75638 210 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 PSMG1O95456 288 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 NEFHP12036 1026 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 LHX2P50458 406 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 FOXF2Q12947 444 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 GAB1Q13480 694 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 GALNTL6Q49A17 601 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 KANK2Q63ZY3 851 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 MED12LQ86YW9 2145 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 DDIASQ8IXT1 998 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 RNF138Q8WVD3 245 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 INTS12Q96CB8 462 aaKnown RBP17.7■□□□□ 0.42
LIME1-201ENST00000309546 PPCDCQ96CD2 204 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 METTL2AQ96IZ6 378 aaKnown RBP17.7■□□□□ 0.42
LIME1-201ENST00000309546 FAM111AQ96PZ2 611 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 CCT7Q99832 543 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 TRMOQ9BU70 441 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 MECRQ9BV79 373 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 TUBB1Q9H4B7 451 aa17.7■□□□□ 0.42
LIME1-201ENST00000309546 MRTO4Q9UKD2 239 aaKnown RBP17.7■□□□□ 0.42
LIME1-201ENST00000309546 SPAG7O75391 227 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 CHRNGP07510 517 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 ZNF708P17019 499 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 SDC1P18827 310 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 ALDH3A1P30838 453 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 DNAJA1P31689 397 aaKnown RBP17.69■□□□□ 0.42
LIME1-201ENST00000309546 DSCR4P56555 118 aaPredicted RBP17.69■□□□□ 0.42
LIME1-201ENST00000309546 CLDN18P56856 261 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 IFFO1Q0D2I5 559 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 TESK1Q15569 626 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 ZNF385BQ569K4 471 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 RAET1LQ5VY80 246 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 Q6ZSR9 355 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 TRABD2AQ86V40 505 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 GRAMD2AQ8IUY3 354 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 UBQLNLQ8IYU4 475 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 GCNT2Q8N0V5 402 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 RIBC1Q8N443 379 aaPredicted RBP17.69■□□□□ 0.42
LIME1-201ENST00000309546 BANPQ8N9N5 519 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 ZFP28Q8NHY6 868 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 AGR3Q8TD06 166 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 TM9SF2Q99805 663 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 LMF2Q9BU23 707 aaKnown RBP17.69■□□□□ 0.42
LIME1-201ENST00000309546 G6PC3Q9BUM1 346 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 CLEC4MQ9H2X3 399 aaPredicted RBP17.69■□□□□ 0.42
LIME1-201ENST00000309546 REEP4Q9H6H4 257 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 SDHAF3Q9NRP4 125 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 MKS1Q9NXB0 559 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 MED11Q9P086 117 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 SLC17A7Q9P2U7 560 aa17.69■□□□□ 0.42
LIME1-201ENST00000309546 TUBAL3A6NHL2 446 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 TMEM233B4DJY2 109 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 NPIPB8E9PQR5 432 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 FADS1O60427 444 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 ZIC3O60481 467 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 IL18BPO95998 194 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 HK1P19367 917 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 CHMP24386 653 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 GABRA3P34903 492 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 CPA2P48052 419 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 CLK3P49761 638 aaKnown RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 ART1P52961 327 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 PRKAG1P54619 331 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 PSMD4P55036 377 aaKnown RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 VSNL1P62760 191 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 RFTN2Q52LD8 501 aaPredicted RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 P4HA3Q7Z4N8 544 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 LUZP2Q86TE4 346 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 KIF18BQ86Y91 864 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 FADS6Q8N9I5 356 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 OR2M3Q8NG83 312 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 FBXO30Q8TB52 745 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 FAM222BQ8WU58 562 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 TWIST2Q8WVJ9 160 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 PIK3R3Q92569 461 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 WNT2BQ93097 391 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 RMND5BQ96G75 393 aaPredicted RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 FCRL1Q96LA6 429 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 SFXN3Q9BWM7 321 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 PCNX3Q9H6A9 2034 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 C3orf14Q9HBI5 128 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 FAM120CQ9NX05 1096 aaKnown RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 SH3BP4Q9P0V3 963 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 CLCF1Q9UBD9 225 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 BAIAP2L1Q9UHR4 511 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 ABCG2Q9UNQ0 655 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 MRPS18CQ9Y3D5 142 aaKnown RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 DNAJC15Q9Y5T4 150 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 ANKHD1Q8IWZ3 2542 aaKnown RBP17.68■□□□□ 0.42
LIME1-201ENST00000309546 SPG11Q96JI7 2443 aa17.68■□□□□ 0.42
LIME1-201ENST00000309546 MPDZO75970 2070 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms