RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LMLNQ96KR4 655 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 CDADC1Q9BWV3 514 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 NKX2-4Q9H2Z4 354 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 QPCTLQ9NXS2 382 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 BTNL2Q9UIR0 455 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 LINC01553A4QN01 128 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 A8MUA0 341 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 FRS3O43559 492 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 DDOSTP39656 456 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 CPOQ8IVL8 374 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 IQCF2Q8IXL9 164 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 OR10H5Q8NGA6 315 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 PDFQ9HBH1 243 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 NPAP1Q9NZP6 1156 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 FAM227AF5H4B4 570 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 NDUFS4O43181 175 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 FXYD6P3P58550 94 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 STXBP1P61764 594 aaKnown RBP14.52□□□□□ -0.08
SHH-201ENST00000297261 TBPL1P62380 186 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 ERVK-25P63136 954 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 ATCAYQ86WG3 371 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 GID4Q8IVV7 300 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 OR52E4Q8NGH9 312 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 C15orf40Q8WUR7 153 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 HMGB4Q8WW32 186 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 LCN9Q8WX39 176 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 SGTBQ96EQ0 304 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 RBM18Q96H35 190 aaKnown RBP14.52□□□□□ -0.08
SHH-201ENST00000297261 NIPSNAP1Q9BPW8 284 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 PCBD2Q9H0N5 130 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 MRPS30Q9NP92 439 aaKnown RBP14.52□□□□□ -0.08
SHH-201ENST00000297261 FKBP14Q9NWM8 211 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 RASD1Q9Y272 281 aa14.52□□□□□ -0.08
SHH-201ENST00000297261 TRBV2A0A0J9YWF9 115 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 MSL3P1P0C860 447 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 ACP5P13686 325 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 PUM1Q14671 1186 aaKnown RBP eCLIP14.52□□□□□ -0.09
SHH-201ENST00000297261 TMEM240Q5SV17 173 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 SLC22A10Q63ZE4 541 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 OR51L1Q8NGJ5 315 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 CHFRQ96EP1 664 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 TRIB3Q96RU7 358 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 NTMT1Q9BV86 223 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 GATBO75879 557 aaKnown RBP14.52□□□□□ -0.09
SHH-201ENST00000297261 SCO1O75880 301 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 KRT33AO76009 404 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 RLN2P04090 185 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 CMPK1P30085 196 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 KDM4DQ6B0I6 523 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 BCDIN3DQ7Z5W3 292 aaKnown RBP14.52□□□□□ -0.09
SHH-201ENST00000297261 SERPINA12Q8IW75 414 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 CLEC2DQ9UHP7 191 aa14.52□□□□□ -0.09
SHH-201ENST00000297261 OR7A17O14581 309 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 NDUFV2P19404 249 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 MLLT11Q13015 90 aaPredicted RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 USF2Q15853 346 aaPredicted RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 COL28A1Q2UY09 1125 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 UGT3A2Q3SY77 523 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 IRAK1BP1Q5VVH5 260 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TMPRSS12Q86WS5 348 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.51□□□□□ -0.09
SHH-201ENST00000297261 FANK1Q8TC84 345 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 DOK4Q8TEW6 326 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 THEM6Q8WUY1 208 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 GLYATL1Q969I3 302 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 LRIG1Q96JA1 1093 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ZNF514Q96K75 400 aaPredicted RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 IKZF5Q9H5V7 419 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 A3GALT2U3KPV4 340 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 METTL21EPA6NDL7 271 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TARM1B6A8C7 271 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 PEX11BO96011 259 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 PROS1P07225 676 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 SPNP16150 400 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 CTBP2P56545 445 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TSC22D1Q15714 1073 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ZCCHC12Q6PEW1 402 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 BEST3Q8N1M1 668 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 CYB561A3Q8NBI2 242 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ZNF285Q96NJ3 590 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 SLC12A9Q9BXP2 914 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 NT5DC2Q9H857 520 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 IL21Q9HBE4 155 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 DZANK1Q9NVP4 752 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TCRBV5S2A0A599 114 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 PGAM2P15259 253 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TGM1P22735 817 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 PDHA2P29803 388 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 OR3A2P47893 321 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 AIMP2Q13155 320 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 EIF5AL1Q6IS14 154 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 ULK3Q6PHR2 472 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ALKAL2Q6UX46 152 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 CFAP77Q6ZQR2 320 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TMEM179BQ7Z7N9 219 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 NRMQ8IXM6 262 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 GPALPP1Q8IXQ4 340 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ECHDC3Q96DC8 303 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 HSPA12BQ96MM6 686 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 METTL17Q9H7H0 456 aaPredicted RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms