RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HTRA1Q92743 480 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 RIPOR3Q96MK2 946 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 MCHR1Q99705 422 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 IL20RAQ9UHF4 553 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 DIMT1Q9UNQ2 313 aaKnown RBP18.75■□□□□ 0.59
VPS53-201ENST00000291074 LRRTM2O43300 516 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 GNSP15586 552 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 PRKAR1BP31321 381 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 TGM4P49221 684 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 TSPAN31Q12999 210 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 ZNF542PQ5EBM4 170 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 OR2G6Q5TZ20 316 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 SLC30A6Q6NXT4 461 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 ZNF836Q6ZNA1 936 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 RRM2BQ7LG56 351 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 ZNF761Q86XN6 746 aaPredicted RBP18.75■□□□□ 0.59
VPS53-201ENST00000291074 MINDY2Q8NBR6 621 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 TMEM52Q8NDY8 209 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 OR5T3Q8NGG3 340 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 TMEM163Q8TC26 289 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 TMEM255BQ8WV15 326 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 FAM3CQ92520 227 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 YIPF2Q9BWQ6 316 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 BARHL1Q9BZE3 327 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 RERGLQ9H628 205 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 PILRAQ9UKJ1 303 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 WDR45Q9Y484 360 aa18.75■□□□□ 0.59
VPS53-201ENST00000291074 USP34Q70CQ2 3546 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 TCRBV21S2A2A0A5A6 115 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 AP3D1O14617 1153 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 CELA2BP08218 269 aaPredicted RBP18.74■□□□□ 0.59
VPS53-201ENST00000291074 PRKCDQ05655 676 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 TUBA3EQ6PEY2 450 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 Q6ZSR6 202 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 TRIM69Q86WT6 500 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 NRMQ8IXM6 262 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 OR2L13Q8N349 312 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 ADAP2Q9NPF8 381 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 NDUFB11Q9NX14 153 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 KLHL28Q9NXS3 571 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 CLDND1Q9NY35 253 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 PEX16Q9Y5Y5 336 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 LRRC72A6NJI9 287 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 H0YGG7 62 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 TNFSF14O43557 240 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 CPMP14384 443 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 ALOX12P18054 663 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 ENDOUP21128 410 aaKnown RBP18.74■□□□□ 0.59
VPS53-201ENST00000291074 ARF3P61204 181 aaPredicted RBP18.74■□□□□ 0.59
VPS53-201ENST00000291074 PPP1CAP62136 330 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 SFSWAPQ12872 951 aaKnown RBP18.74■□□□□ 0.59
VPS53-201ENST00000291074 GPR68Q15743 365 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 SLC25A30Q5SVS4 291 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 GDF7Q7Z4P5 450 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 PHC2Q8IXK0 858 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 FLCNQ8NFG4 579 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 TMEM203Q969S6 136 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 RNFT2Q96EX2 444 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 SLC22A7Q9Y694 548 aa18.74■□□□□ 0.59
VPS53-201ENST00000291074 ALOX5P09917 674 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 PSMA1P25786 263 aaKnown RBP18.73■□□□□ 0.59
VPS53-201ENST00000291074 C1DQ13901 141 aaKnown RBP18.73■□□□□ 0.59
VPS53-201ENST00000291074 POC5Q8NA72 575 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 OR13H1Q8NG92 308 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 OR4Q3Q8NH05 313 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 PIGXQ8TBF5 258 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 ARSGQ96EG1 525 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 NTMQ9P121 344 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 YARS2Q9Y2Z4 477 aaKnown RBP18.73■□□□□ 0.59
VPS53-201ENST00000291074 NPIPA5A0A0B4J1W7 369 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 DUXAA6NLW8 204 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 NPIPA7E9PJI5 369 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 NPIPA8P0DM63 369 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 ZNF45Q02386 682 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 MLLT11Q13015 90 aaPredicted RBP18.73■□□□□ 0.59
VPS53-201ENST00000291074 SLC36A4Q6YBV0 504 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 SLC22A18ASQ8N1D0 253 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 SLC41A3Q96GZ6 507 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 ZFYVE21Q9BQ24 234 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 SNTG1Q9NSN8 517 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 FBXO34Q9NWN3 711 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 SEC14L4Q9UDX3 406 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 STUB1Q9UNE7 303 aa18.73■□□□□ 0.59
VPS53-201ENST00000291074 COL4A2P08572 1712 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.72■□□□□ 0.59
VPS53-201ENST00000291074 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.72■□□□□ 0.59
VPS53-201ENST00000291074 FGF17O60258 216 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 IFNGR2P38484 337 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 CD79BP40259 229 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 MAPK14Q16539 360 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 ZNF181Q2M3W8 571 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 RASSF6Q6ZTQ3 369 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 GALNT12Q8IXK2 581 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 ANKK1Q8NFD2 765 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 HMGB4Q8WW32 186 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 ACOT11Q8WXI4 607 aaPredicted RBP18.72■□□□□ 0.59
VPS53-201ENST00000291074 PIK3R3Q92569 461 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 STARD5Q9NSY2 213 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 SAGE2PA6NJ88 616 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 PRODHO43272 600 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms