RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PPP4R1LQ9P1A2 415 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 KLF15Q9UIH9 416 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF443Q9Y2A4 671 aaPredicted RBP10.83□□□□□ -0.68
VPS4A-201ENST00000254950 SLC35A3Q9Y2D2 325 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 GSTK1Q9Y2Q3 226 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 R4GN57 208 aa10.83□□□□□ -0.68
VPS4A-201ENST00000254950 IMPDH2P12268 514 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 CDH15P55291 814 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 KCNJ10P78508 379 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 SLC36A3Q495N2 470 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 PRAMEF8Q5VWM4 474 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 PRAMEF7Q5VXH5 474 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 PAPD4Q6PIY7 484 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 KCTD8Q6ZWB6 473 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 VN1R5Q7Z5H4 357 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 SFTPA2Q8IWL1 248 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 EFHD2Q96C19 240 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 UBQLN4Q9NRR5 601 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 RSL24D1Q9UHA3 163 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 A0A1W2PR77 199 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 SYT5O00445 386 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 TLX2O43763 284 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 CH25HO95992 272 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 DSG2Q14126 1118 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 ZXDCQ2QGD7 858 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 TMPRSS11AQ6ZMR5 421 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 OAFQ86UD1 273 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 TCEANCQ8N8B7 351 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 OR7G2Q8NG99 324 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 OR7G1Q8NGA0 311 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 OR2I1PQ8NGU4 316 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 CCDC74BQ96LY2 380 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 ANKRA2Q9H9E1 313 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 PADI1Q9ULC6 663 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 DPPA5A6NC42 116 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 RGS5O15539 181 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 MITFO75030 526 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 PEBP1P30086 187 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 KCNJ5P48544 419 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 NUDT6P53370 316 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 CMPK2Q5EBM0 449 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 B3GNT6Q6ZMB0 384 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 FAM86B1Q8N7N1 296 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 OR9Q2Q8NGE9 314 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 HDAC2Q92769 488 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 SMAD5Q99717 465 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 JRKO75564 520 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF3P17036 446 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 TRHRP34981 398 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 HNRNPFP52597 415 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 EFR3AQ14156 821 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 MLC1Q15049 377 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 DUSP5Q16690 384 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 KCTD21Q4G0X4 260 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 C6orf141Q5SZD1 244 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 PDZK1Q5T2W1 519 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 RAB43Q86YS6 212 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 MSRB3Q8IXL7 192 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 FCGR1BQ92637 280 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 DIO2Q92813 273 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 STACQ99469 402 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 QRSL1Q9H0R6 528 aaKnown RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 CXorf21Q9HAI6 301 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 SLC6A13Q9NSD5 602 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 TOR4AQ9NXH8 423 aa10.82□□□□□ -0.68
VPS4A-201ENST00000254950 MAGED1Q9Y5V3 778 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-201ENST00000254950 DOCK8Q8NF50 2099 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 A0A087WV62 115 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 HMGN4O00479 90 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 ACVR2AP27037 513 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 LCN1P1Q5VSP4 162 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 RPL13AP3Q6NVV1 102 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 PTOV1Q86YD1 416 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 OR10H5Q8NGA6 315 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 OR51A7Q8NH64 312 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 C9orf43Q8TAL5 461 aaPredicted RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 STT3BQ8TCJ2 826 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 PRRG4Q9BZD6 226 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 DNAJB5O75953 348 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 GKN3PP0CG01 181 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 ATP12AP54707 1039 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 CRYZQ08257 329 aaKnown RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 ADPRMQ3LIE5 342 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 SLC30A6Q6NXT4 461 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 NRMQ8IXM6 262 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 KBTBD2Q8IY47 623 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 ASB15Q8WXK1 588 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 SGTBQ96EQ0 304 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 DUS3LQ96G46 650 aaKnown RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 FCRL1Q96LA6 429 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 ASPNQ9BXN1 380 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 IRF2BPLQ9H1B7 796 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 FSCN3Q9NQT6 498 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 POLE3Q9NRF9 147 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 COMMD3-BMI1R4GMX3 469 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 NSG1A0A0A6YYJ2 146 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 TRBV11-1A0A0K0K1C0 115 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 BLOC1S5-TXNDC5H3BN57 136 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 TLX3O43711 291 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 154.4 ms