RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LCORLQ8N3X6 602 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TRUB1Q8WWH5 349 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SIGMAR1Q99720 223 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 URM1Q9BTM9 101 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FTHL17Q9BXU8 183 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CADM1Q9BY67 442 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RANGRFQ9HD47 186 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 EXOSC4Q9NPD3 245 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PRPF19Q9UMS4 504 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LIPT1Q9Y234 373 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 HS3ST4Q9Y661 456 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 BRCA1P38398 1863 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1W2PQL4 384 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF487B1APH4 448 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 E7ESA3 106 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CLIC1O00299 241 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ORC5O43913 435 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 B4GALT3O60512 393 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SIX6O95475 246 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 IFNGP01579 166 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CHRM2P08172 466 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR2T7P0C7T2 308 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FAM3AP98173 230 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 HAGHQ16775 308 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 KHDC1Q4VXA5 237 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 AGAP7PQ5VUJ5 663 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ADAM5Q6NVV9 412 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ABI3BPQ7Z7G0 1075 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MFSD8Q8NHS3 518 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FAM110BQ8TC76 370 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RBM24Q9BX46 236 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CHIAQ9BZP6 476 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CXorf21Q9HAI6 301 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PRDM8Q9NQV8 689 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PIGVQ9NUD9 493 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 HAO2Q9NYQ3 351 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CALML5Q9NZT1 146 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DNPEPQ9ULA0 475 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PCDHB7Q9Y5E2 793 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NUBP2Q9Y5Y2 271 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF804BA4D1E1 1349 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 HCRTR2O43614 444 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RAD51DO75771 328 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MT-CYBP00156 380 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RAB40ALP0C0E4 278 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CDK2P24941 298 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A4P31645 630 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ETV4P43268 484 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CLCN5P51795 746 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SPIBQ01892 262 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FGFBP1Q14512 234 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LBHQ53QV2 105 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR4A47Q6IF82 309 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF782Q6ZMW2 699 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NPAS3Q8IXF0 933 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF567Q8N184 647 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM161BQ8NDZ6 487 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FCRL2Q96LA5 508 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 COQ10AQ96MF6 247 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NKX6-2Q9C056 277 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CHST5Q9GZS9 411 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LRRC4Q9HBW1 653 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 GPAMQ9HCL2 828 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LRIT1Q9P2V4 623 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DHCR7Q9UBM7 475 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FBXL4Q9UKA2 621 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TBX20Q9UMR3 447 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DSCAMO60469 2012 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 GADD45AP24522 165 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MYL9P24844 172 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SSTR1P30872 391 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 BAMBIQ13145 260 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SBK1Q52WX2 424 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR10A7Q8NGE5 316 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR8J3Q8NGG0 315 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PRR14Q9BWN1 585 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 HES7Q9BYE0 225 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ULBP3Q9BZM4 244 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SLC38A1Q9H2H9 487 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CDC42EP4Q9H3Q1 356 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MAGEL2Q9UJ55 1249 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 KIAA1107Q9UPP5 1409 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TEX14Q8IWB6 1497 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LOC105369274A0A096LPK9 316 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LOC102723532A0A0G2JNH3 316 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FAM240BA0A1B0GVZ2 78 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RCCD1A6NED2 376 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RFPL1O75677 317 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR3A1P47881 315 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 KCNJ3P48549 501 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 EGR3Q06889 387 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF268Q14587 947 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR2G6Q5TZ20 316 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DHRS7BQ6IAN0 325 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DNAJC24Q6P3W2 148 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NIPA1Q7RTP0 329 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 APCDD1Q8J025 514 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR4N4Q8N0Y3 316 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR51Q1Q8NH59 317 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 WNT8BQ93098 351 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms