RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PXYLP1Q8TE99 480 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CCDC107Q8WV48 283 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PHYHIPQ92561 330 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CYP2S1Q96SQ9 504 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KCNJ15Q99712 375 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MED10Q9BTT4 135 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ADAT1Q9BUB4 502 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 JAM3Q9BX67 310 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CPEB1Q9BZB8 566 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 BARHL1Q9BZE3 327 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PTGES2Q9H7Z7 377 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SEMA4BQ9NPR2 832 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 H2AFY2Q9P0M6 372 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 LUZP4Q9P127 313 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GIMAP2Q9UG22 337 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF230Q9UIE0 474 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CFAP20Q9Y6A4 193 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KIF1AQ12756 1690 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GGT3PA6NGU5 568 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 NPIPA2E9PIF3 369 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SUV39H1O43463 412 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ADRB2P07550 413 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ERCC1P07992 297 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 EBLN1P0CF75 366 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 TIMP2P16035 220 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ABOP16442 354 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 BDKRB2P30411 391 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 EVX1P49640 407 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 EVX2Q03828 476 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ELAVL2Q12926 359 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GAMTQ14353 236 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SLC10A1Q14973 349 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GUK1Q16774 197 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.44□□□□□ -1.543e-6■■■□□ 18.5
SCN1A-216ENST00000637968 SPDYE2Q495Y8 402 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PDZD11Q5EBL8 140 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CPZQ66K79 652 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KIAA1161Q6NSJ0 714 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ACSM5Q6NUN0 579 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 FAM180AQ6UWF9 173 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF546Q86UE3 836 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CD163Q86VB7 1156 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KLBQ86Z14 1044 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SYT14Q8NB59 555 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR56B1Q8NGI3 324 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GTPBP3Q969Y2 492 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MRGPRX4Q96LA9 322 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ZDHHC15Q96MV8 337 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MS4A4EQ96PG1 132 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 NDUFAF3Q9BU61 184 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KATNB1Q9BVA0 655 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 DDA1Q9BW61 102 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SEC11CQ9BY50 192 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ACKR4Q9NPB9 350 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 FAM120CQ9NX05 1096 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ADAM18Q9Y3Q7 739 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KPTNQ9Y664 436 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SLCO1B1Q9Y6L6 691 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 NAP1L6A6NFF2 107 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF726A6NNF4 738 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ERI2A8K979 691 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ARPC1BO15143 372 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MAFKO60675 156 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C6orf47O95873 294 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SYPP08247 313 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FOLR2P14207 255 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SMPD1P17405 629 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 POU3F2P20265 443 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PRPS1L1P21108 318 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 S100A3P33764 101 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PBX3P40426 434 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SLC19A1P41440 591 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MRPL19P49406 292 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DIO3P55073 304 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 NRG1Q02297 640 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MBTPS1Q14703 1052 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ADNP2Q6IQ32 1131 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM71Q6P5X7 295 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZPBP2Q6X784 338 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF730Q6ZMV8 503 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ABHD13Q7L211 337 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C7orf61Q8IZ16 206 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 OR9A1PQ8NGU1 263 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 LRRN4Q8WUT4 740 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MSLNLQ96KJ4 702 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HRASLS5Q96KN8 279 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RAD9AQ99638 391 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SYT17Q9BSW7 474 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MAN2C1Q9NTJ4 1040 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 CFAP97Q9P2B7 532 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RNF24Q9Y225 148 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 AKT3Q9Y243 479 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ELOA3CA0A087WX78 387 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SUSD5O60279 629 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ABLIM3O94929 683 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PCCBP05166 539 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HOXC4P09017 264 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RAB5AP20339 215 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 AHCYP23526 432 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RBMS1P29558 406 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms