RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ADH1BP00325 375 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 CSF3P09919 207 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 C8orf89P0DMQ9 161 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 C5AR1P21730 350 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 FCARP24071 287 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 MC3RP41968 323 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 ACSM1Q08AH1 577 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 UAP1L1Q3KQV9 507 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 C2orf27AQ580R0 203 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 HEPHL1Q6MZM0 1159 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 MEX3DQ86XN8 651 aaKnown RBP11.96□□□□□ -0.49
LINC00540-203ENST00000631321 OR9A2Q8NGT5 310 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 ACOT11Q8WXI4 607 aaPredicted RBP11.96□□□□□ -0.49
LINC00540-203ENST00000631321 RFKQ969G6 155 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 C1GALT1C1Q96EU7 318 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 ST6GAL2Q96JF0 529 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 SOSTQ9BQB4 213 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 JAM3Q9BX67 310 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 ACTRT3Q9BYD9 372 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 TP63Q9H3D4 680 aaPredicted RBP11.96□□□□□ -0.49
LINC00540-203ENST00000631321 LYARQ9NX58 379 aaKnown RBP11.96□□□□□ -0.49
LINC00540-203ENST00000631321 IL20Q9NYY1 176 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 CNIH4Q9P003 139 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 EXOGQ9Y2C4 368 aaKnown RBP11.96□□□□□ -0.49
LINC00540-203ENST00000631321 GSTK1Q9Y2Q3 226 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 GPR52Q9Y2T5 361 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 N6AMT1Q9Y5N5 214 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 STON1Q9Y6Q2 735 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 OR52A4PA6NMU1 304 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 AP3D1O14617 1153 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 SURF4O15260 269 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 APOL3O95236 402 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 PAK4O96013 591 aaPredicted RBP11.96□□□□□ -0.5
LINC00540-203ENST00000631321 IFNA8P32881 189 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 TRHRP34981 398 aaPredicted RBP11.96□□□□□ -0.5
LINC00540-203ENST00000631321 GJA4P35212 333 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 ERVK-21P61565 698 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 FABP5Q01469 135 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 KRT33BQ14525 404 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 CRTC2Q53ET0 693 aaPredicted RBP11.96□□□□□ -0.5
LINC00540-203ENST00000631321 RDH10Q8IZV5 341 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 HDDC3Q8N4P3 179 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 ARIH2OSQ8N7S6 290 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 TOR1AIP2Q8NFQ8 470 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 OR4Q3Q8NH05 313 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 PHOSPHO2Q8TCD6 241 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 DIRAS2Q96HU8 199 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 FAM46AQ96IP4 442 aaKnown RBP11.96□□□□□ -0.5
LINC00540-203ENST00000631321 TM9SF2Q99805 663 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF649Q9BS31 505 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 C1QTNF2Q9BXJ5 285 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 ANKRA2Q9H9E1 313 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 SPHK1Q9NYA1 384 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 PLEKHM1Q9Y4G2 1056 aa11.96□□□□□ -0.5
LINC00540-203ENST00000631321 HMX3A6NHT5 357 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CPSF4LA6NMK7 179 aaKnown RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 FRS3O43559 492 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 OR5F1O95221 314 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CCNYL3P0C7X3 344 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CMPK1P30085 196 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SLC1A3P43003 542 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CDH11P55287 796 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 STXBP1P61764 594 aaKnown RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 MAP4K2Q12851 820 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 ZNF155Q12901 538 aaPredicted RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 LRRC32Q14392 662 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 RPE65Q16518 533 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 NRROSQ86YC3 692 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SYT14Q8NB59 555 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CAPSLQ8WWF8 208 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 KLK6Q92876 244 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CHFRQ96EP1 664 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 C10orf90Q96M02 699 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 TRMT61BQ9BVS5 477 aaKnown RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 KIR3DX1Q9H7L2 352 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 KLHL28Q9NXS3 571 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SNX7Q9UNH6 387 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 TRPM6Q9BX84 2022 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 NUMA1Q14980 2115 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 MEIOCA2RUB1 952 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 GSAPA4D1B5 854 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 IGHA1P01876 353 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 HLA-DQB1P01920 261 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 THY1P04216 161 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 GNSP15586 552 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 RCVRNP35243 200 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CD79BP40259 229 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 PPP3R1P63098 170 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 RUNX3Q13761 415 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 DSG2Q14126 1118 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 PGGHGQ32M88 737 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 C6orf132Q5T0Z8 1188 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SLC35F1Q5T1Q4 408 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 MBOAT2Q6ZWT7 520 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 CACUL1Q86Y37 369 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 Q8N9G6 341 aaPredicted RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 OR52P1PQ8NH57 321 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SLC35A4Q96G79 324 aa11.95□□□□□ -0.5
LINC00540-203ENST00000631321 SCARF2Q96GP6 870 aaPredicted RBP11.95□□□□□ -0.5
LINC00540-203ENST00000631321 PHOX2BQ99453 314 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms