RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NMNAT2Q9BZQ4 307 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ZNF350Q9GZX5 532 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 INPP5EQ9NRR6 644 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 DDX28Q9NUL7 540 aaKnown RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 ERVK-18Q9QC07 812 aa1.41□□□□□ -2.18
SCN1A-208ENST00000625916 KIF26AQ9ULI4 1882 aaPredicted RBP1.41□□□□□ -2.18
SCN1A-208ENST00000625916 NPIPA5A0A0B4J1W7 369 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 TMEM150BA6NC51 233 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 FAM166BA8MTA8 275 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 NPIPA5E9PKD4 350 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 C11orf98E9PRG8 122 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 TMX2-CTNND1H3BSU7 103 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 SH2D1BO14796 132 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 CFLARO15519 480 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 REC8O95072 547 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 GSTA1P08263 222 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 FERP16591 822 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 CCNCP24863 283 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 HOXD10P28358 340 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 CDH5P33151 784 aaPredicted RBP1.4□□□□□ -2.19
SCN1A-208ENST00000625916 ACVR1BP36896 505 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 SERPINH1P50454 418 aaKnown RBP1.4□□□□□ -2.19
SCN1A-208ENST00000625916 METAP1P53582 386 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 YWHAHQ04917 246 aaPredicted RBP1.4□□□□□ -2.19
SCN1A-208ENST00000625916 BNIP1Q12981 228 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 MOBPQ13875 183 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 PIWIL3Q7Z3Z3 882 aaKnown RBP1.4□□□□□ -2.19
SCN1A-208ENST00000625916 GALNTL5Q7Z4T8 443 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 ABHD12BQ7Z5M8 362 aaPredicted RBP1.4□□□□□ -2.19
SCN1A-208ENST00000625916 STHQ8IWL8 128 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 SAXO1Q8IYX7 474 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 OR52J3Q8NH60 311 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 BLOC1S5Q8TDH9 187 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 RDH5Q92781 318 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 MYDGFQ969H8 173 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 FOPNLQ96NB1 174 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 SMIM14Q96QK8 99 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 CPXM1Q96SM3 734 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 DDX50Q9BQ39 737 aaKnown RBP1.4□□□□□ -2.19
SCN1A-208ENST00000625916 ALG9Q9H6U8 611 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 DCLRE1BQ9H816 532 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 MAGEF1Q9HAY2 307 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 NRN1Q9NPD7 142 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 ABCB8Q9NUT2 735 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 NRBP1Q9UHY1 535 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 OTOGLQ3ZCN5 2332 aa1.4□□□□□ -2.19
SCN1A-208ENST00000625916 SYNJ2O15056 1496 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 A0A0J9YVX5 310 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 LRRD1A4D1F6 860 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 CACNB4O00305 520 aaPredicted RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 RANBP6O60518 1105 aaKnown RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF254O75437 659 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 LYPLA1O75608 230 aaPredicted RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 SUPT7LO94864 414 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 TIMP1P01033 207 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 SFTPBP07988 381 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 CD1BP29016 333 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 ZNF136P52737 540 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 NUP107P57740 925 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 HERV-K104P63124 156 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 ASIC1P78348 528 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 EXOSC7Q15024 291 aaKnown RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 IFI44LQ53G44 452 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 OR2B11Q5JQS5 317 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 DCST2Q5T1A1 773 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 LINC00696Q6ZRV3 163 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 FRA10AC1Q70Z53 315 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 TSEN54Q7Z6J9 526 aaKnown RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 C9orf40Q8IXQ3 194 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 SYCP3Q8IZU3 236 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 PYROXD2Q8N2H3 581 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 CERS5Q8N5B7 392 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 ALLCQ8N6M5 410 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 FNDC8Q8TC99 324 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 NEIL2Q969S2 332 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 MRPL53Q96EL3 112 aaKnown RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 TMEM101Q96IK0 257 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 EPSTI1Q96J88 318 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 TSPY26PQ9H489 355 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 NXF3Q9H4D5 531 aaKnown RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 ZWILCHQ9H900 591 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 AKIRIN1Q9H9L7 192 aaPredicted RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 COPS7BQ9H9Q2 264 aaPredicted RBP1.39□□□□□ -2.19
SCN1A-208ENST00000625916 GRPEL1Q9HAV7 217 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 ACOXLQ9NUZ1 547 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 MARCH5Q9NX47 278 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 SCML2Q9UQR0 700 aa1.39□□□□□ -2.19
SCN1A-208ENST00000625916 A0A0A6YYC8 382 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 A4D1N5 150 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 A6NDX4 124 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 C17orf51A8MQB3 221 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 I3L1I5 382 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 CHEK1O14757 476 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 TBL1XO60907 577 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 ECDO95905 644 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 SEMG1P04279 462 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 SERPINF2P08697 491 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 HIST1H2AGP0C0S8 130 aaPredicted RBP1.38□□□□□ -2.19
SCN1A-208ENST00000625916 VCLP18206 1134 aa1.38□□□□□ -2.19
SCN1A-208ENST00000625916 PTBP1P26599 531 aaKnown RBP eCLIP1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms