RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TXNL4BQ9NX01 149 aaKnown RBP8.46□□□□□ -1.05
VCL-206ENST00000623461 RASD1Q9Y272 281 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 A6NL46 340 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 NPIPA5E9PKD4 350 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 PIRO00625 290 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 NPC1O15118 1278 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 ARL6IP1Q15041 203 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 GTDC1Q4AE62 458 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 MANEALQ5VSG8 457 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 CACUL1Q86Y37 369 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 PELI3Q8N2H9 469 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 FBXO15Q8NCQ5 510 aaPredicted RBP8.46□□□□□ -1.05
VCL-206ENST00000623461 FBXO22Q8NEZ5 403 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 OR52P1PQ8NH57 321 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 OR5AK2Q8NH90 309 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 TMEM19Q96HH6 336 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 OR2M4Q96R27 311 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 OR14A2Q96R54 314 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 QRSL1Q9H0R6 528 aaKnown RBP8.46□□□□□ -1.05
VCL-206ENST00000623461 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.46□□□□□ -1.05
VCL-206ENST00000623461 NPIPA1Q9UND3 350 aa8.46□□□□□ -1.05
VCL-206ENST00000623461 TRAV18A0A075B6X5 111 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ZNF705FA8MVS1 300 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 ADAM23O75077 832 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 AK1P00568 194 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 SYPP08247 313 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ZNF705DP0CH99 300 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 ZNF705BP0CI00 300 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 CD68P34810 354 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 MAGEA3P43357 314 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ZNF417Q8TAU3 575 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 C3orf30Q96M34 536 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ZNF559Q9BR84 538 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 CENPOQ9BU64 300 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 PADI3Q9ULW8 664 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 A0A0G2JN53 185 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ADM5C9JUS6 153 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 BLOC1S5-TXNDC5H3BN57 136 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 GABRPO00591 440 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 OR7A17O14581 309 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ZNF254O75437 659 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 TM4SF1P30408 202 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 IDH3GP51553 393 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 RAB8AP61006 207 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 SLAMF1Q13291 335 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ITPRIPL2Q3MIP1 535 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 C3orf38Q5JPI3 329 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 NADSYN1Q6IA69 706 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 RASGRP3Q8IV61 690 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 DCUN1D3Q8IWE4 304 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 SLC25A36Q96CQ1 311 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 FOXRED1Q96CU9 486 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 NKX6-2Q9C056 277 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 VNN3Q9NY84 501 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 LRFN1Q9P244 771 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 YARS2Q9Y2Z4 477 aaKnown RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 SHOXO15266 292 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 FZD7O75084 574 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 CD3GP09693 182 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 PGGT1BP53609 377 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ACSM3Q53FZ2 586 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 C1QTNF12Q5T7M4 302 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 LRRC56Q8IYG6 542 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 IQCF1Q8N6M8 205 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 AUTS2Q8WXX7 1259 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ZBTB8AQ96BR9 441 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 FAM46AQ96IP4 442 aaKnown RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 SERINC1Q9NRX5 453 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 ELOVL2Q9NXB9 296 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 IL36AQ9UHA7 158 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 TMPRSS11EQ9UL52 423 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 CDHR4A6H8M9 788 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 TCRBP04435 133 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 SNRNP70P08621 437 aaKnown RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 PSMB1P20618 241 aaKnown RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 AK4P27144 223 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 NAA10P41227 235 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 P2RX3P56373 397 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 PSPHP78330 225 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 POU6F2P78424 691 aaPredicted RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 ODF4Q2M2E3 257 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 PAN3Q58A45 887 aaKnown RBP8.46□□□□□ -1.06
VCL-206ENST00000623461 GDPD3Q7L5L3 318 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 NRROSQ86YC3 692 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 NUP43Q8NFH3 380 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 SYNPRQ8TBG9 265 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 METTL21AQ8WXB1 218 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 TTTY10Q9BZA0 68 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 NUMBLQ9Y6R0 609 aa8.46□□□□□ -1.06
VCL-206ENST00000623461 GGT3PA6NGU5 568 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 ZNF726A6NNF4 738 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 SRPX2O60687 465 aaPredicted RBP8.45□□□□□ -1.06
VCL-206ENST00000623461 DCNP07585 359 aaKnown RBP8.45□□□□□ -1.06
VCL-206ENST00000623461 PBX2P40425 430 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 MTNR1BP49286 362 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 HBMQ6B0K9 141 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 ZNF585AQ6P3V2 769 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 PDZD3Q86UT5 571 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 HCAR2Q8TDS4 363 aa8.45□□□□□ -1.06
VCL-206ENST00000623461 MARC2Q969Z3 335 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms