RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 OR52R1Q8NGF1 315 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 OR52N2Q8NGI0 321 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 OR8K3Q8NH51 312 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 C16orf52Q8NHV5 167 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 MS4A4EQ96PG1 132 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 CADM1Q9BY67 442 aaKnown RBP13.85□□□□□ -0.19
TRIM28-207ENST00000597136 ADA2Q9NZK5 511 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 CORO2BQ9UQ03 480 aa13.85□□□□□ -0.19
TRIM28-207ENST00000597136 BCAS2O75934 225 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-207ENST00000597136 EMDP50402 254 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 TNFSF10P50591 281 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 CASP9P55211 416 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 RPS26P62854 115 aaKnown RBP13.84□□□□□ -0.19
TRIM28-207ENST00000597136 KLRB1Q12918 225 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 TUBA3CQ13748 450 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 EBPQ15125 230 aaKnown RBP13.84□□□□□ -0.19
TRIM28-207ENST00000597136 SPINK14Q6IE38 97 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 TUBA3EQ6PEY2 450 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 Q6ZS92 163 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 C10orf111Q8N326 155 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 MIPOL1Q8TD10 442 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 ADIPOR1Q96A54 375 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 C16orf58Q96GQ5 468 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 GAL3ST4Q96RP7 486 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 RASL10BQ96S79 203 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 ECSITQ9BQ95 431 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 THTPAQ9BU02 230 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 WWTR1Q9GZV5 400 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 RAD21L1Q9H4I0 556 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 SERHL2Q9H4I8 314 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 EQTNQ9NQ60 294 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 PRPF19Q9UMS4 504 aaKnown RBP13.84□□□□□ -0.19
TRIM28-207ENST00000597136 AP3M1Q9Y2T2 418 aa13.84□□□□□ -0.19
TRIM28-207ENST00000597136 FASNP49327 2511 aaKnown RBP13.84□□□□□ -0.19
TRIM28-207ENST00000597136 OR5H15A6NDH6 313 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 PRAMEF2O60811 474 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 COQ9O75208 318 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 NADKO95544 446 aaPredicted RBP13.83□□□□□ -0.19
TRIM28-207ENST00000597136 PGM1P36871 562 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 CRATP43155 626 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 FADDQ13158 208 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 LASP1Q14847 261 aaKnown RBP13.83□□□□□ -0.19
TRIM28-207ENST00000597136 SAMD4BQ5PRF9 694 aaKnown RBP13.83□□□□□ -0.19
TRIM28-207ENST00000597136 MFSD12Q6NUT3 480 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 LGI4Q8N135 537 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 ARHGAP24Q8N264 748 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 OR5L2Q8NGL0 311 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 OR10A6Q8NH74 314 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 MCUR1Q96AQ8 359 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 CLPTM1LQ96KA5 538 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 SLC35G5Q96KT7 338 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 ZNF583Q96ND8 569 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 YIPF4Q9BSR8 244 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 HES7Q9BYE0 225 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 RNF32Q9H0A6 362 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.83□□□□□ -0.19
TRIM28-207ENST00000597136 CD300AQ9UGN4 299 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 PACSIN3Q9UKS6 424 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 B3GNT3Q9Y2A9 372 aa13.83□□□□□ -0.19
TRIM28-207ENST00000597136 YARS2Q9Y2Z4 477 aaKnown RBP13.83□□□□□ -0.19
TRIM28-207ENST00000597136 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.83□□□□□ -0.19
TRIM28-207ENST00000597136 FLNCQ14315 2725 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 HELZ2Q9BYK8 2649 aaKnown RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 HEATR5AQ86XA9 2040 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 C2orf92A0A1B0GVN3 265 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 OR6B1O95007 311 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 ETFAP13804 333 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 MATN1P21941 496 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 SOX3P41225 446 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 MAGEA8P43361 318 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 MAN2A2P49641 1150 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 GZMMP51124 257 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 NR0B1P51843 470 aaKnown RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 EEFSECP57772 596 aaKnown RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 OC90Q02509 493 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 LIPEQ05469 1076 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 CEACAM7Q14002 265 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 PIGGQ5H8A4 983 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 EXOSC6Q5RKV6 272 aaKnown RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 TNFAIP8L2Q6P589 184 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 IL20RBQ6UXL0 311 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 SLC29A4Q7RTT9 530 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 CALHM3Q86XJ0 350 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 HPS6Q86YV9 775 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 HORMAD2Q8N7B1 307 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 RNF148Q8N7C7 305 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 ZNF441Q8N8Z8 693 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 NUBPLQ8TB37 319 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 TM9SF4Q92544 642 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 UTP23Q9BRU9 249 aaKnown RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 ACTRT3Q9BYD9 372 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 PIF1Q9H611 641 aa13.83□□□□□ -0.2
TRIM28-207ENST00000597136 GMPR2Q9P2T1 348 aaKnown RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 FAF1Q9UNN5 650 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 HEMK1Q9Y5R4 338 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-207ENST00000597136 MYO18BQ8IUG5 2567 aa13.82□□□□□ -0.2
TRIM28-207ENST00000597136 HIVEP3Q5T1R4 2406 aa13.82□□□□□ -0.2
TRIM28-207ENST00000597136 PCNX1Q96RV3 2341 aa13.82□□□□□ -0.2
TRIM28-207ENST00000597136 PRORSD1PA6NEY8 169 aa13.82□□□□□ -0.2
TRIM28-207ENST00000597136 OR6C76A6NM76 312 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms