RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CNTRLQ7Z7A1 2325 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 A0A087WUU8 490 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 LOC105371267A0A1B0GV96 52 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 PIPP12273 146 aaPredicted RBP14.36□□□□□ -0.11
UPF1-204ENST00000596842 NTSP30990 170 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 EVI2BP34910 448 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 CDONQ4KMG0 1287 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 GARNL3Q5VVW2 1013 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 FAM46CQ5VWP2 391 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 C12orf73Q69YU5 71 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 FAM129CQ86XR2 697 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 SIRT3Q9NTG7 399 aaPredicted RBP14.36□□□□□ -0.11
UPF1-204ENST00000596842 IL1AP01583 271 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 RHOP08100 348 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 CHRM4P08173 479 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 FUT1P19526 365 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 KELP23276 732 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 VIPR2P41587 438 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 CCR8P51685 355 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 DCDC1P59894 354 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 CAMK1Q14012 370 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 FAM27D1Q5T7N8 215 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 C19orf48Q6RUI8 117 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 C12orf40Q86WS4 652 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 DNAJC5GQ8N7S2 189 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 ZNF614Q8N883 585 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 BBS10Q8TAM1 723 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 LMLNQ96KR4 655 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 LGR4Q9BXB1 951 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 KCND3Q9UK17 655 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 SDK1Q7Z5N4 2213 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 ADH1AP07327 375 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 CPN2P22792 545 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 BSGP35613 385 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 AHRP35869 848 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 RGS8P57771 180 aaPredicted RBP14.35□□□□□ -0.11
UPF1-204ENST00000596842 STXBP1P61764 594 aaKnown RBP14.35□□□□□ -0.11
UPF1-204ENST00000596842 ARHGAP15Q53QZ3 475 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 MZT2BQ6NZ67 158 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 GDPGP1Q6ZNW5 385 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 HDDC2Q7Z4H3 204 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 KIF18BQ86Y91 864 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 SPRYD4Q8WW59 207 aaPredicted RBP14.35□□□□□ -0.11
UPF1-204ENST00000596842 NXPE3Q969Y0 559 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 RGMAQ96B86 450 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 C12orf66Q96MD2 445 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 AIFM2Q9BRQ8 373 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 OR51V1Q9H2C8 321 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 EXTL2Q9UBQ6 330 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 DIMT1Q9UNQ2 313 aaKnown RBP14.35□□□□□ -0.11
UPF1-204ENST00000596842 TRAPPC4Q9Y296 219 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 GPR55Q9Y2T6 319 aaPredicted RBP14.35□□□□□ -0.11
UPF1-204ENST00000596842 HEATR5BQ9P2D3 2071 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 RGS13O14921 159 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 LYRM1O43325 122 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 CSF2RAP15509 400 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 LAG3P18627 525 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 LIMK1P53667 647 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 CHRNEQ04844 493 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.35□□□□□ -0.114e-7■■■□□ 17.3
UPF1-204ENST00000596842 SLC36A4Q6YBV0 504 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 SLC37A3Q8NCC5 494 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 OR8D4Q8NGM9 314 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 PXYLP1Q8TE99 480 aa14.35□□□□□ -0.11
UPF1-204ENST00000596842 IQCMA0A1B0GVH7 501 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 SLC35G4P0C7Q5 338 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 PTPN2P17706 415 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 GALK2Q01415 458 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 POU4F3Q15319 338 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 PLK5Q496M5 336 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 CLVS2Q5SYC1 327 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 ARL9Q6T311 187 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 NKAIN4Q8IVV8 208 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 OR4N5Q8IXE1 308 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 NRMQ8IXM6 262 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 TBC1D19Q8N5T2 526 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 ARRDC3Q96B67 414 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 MRGPRX3Q96LB0 322 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 MS4A8Q9BY19 250 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 DDX31Q9H8H2 851 aaKnown RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 B3GAT2Q9NPZ5 323 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 RDH8Q9NYR8 311 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 ZMAT5Q9UDW3 170 aaKnown RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 DSPPQ9NZW4 1301 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 OR52A4PA6NMU1 304 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 SOCS6O14544 535 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 KIAA0355O15063 1070 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 REM1O75628 298 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 TBX6O95947 436 aaPredicted RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 PAICSP22234 425 aaKnown RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 GLYR1Q49A26 553 aaPredicted RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 C18orf63Q68DL7 685 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 FAM92BQ6ZTR7 304 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 GDPD1Q8N9F7 314 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 TMEM145Q8NBT3 493 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 GANCQ8TET4 914 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 C19orf43Q9BQ61 176 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 POLDIP3Q9BY77 421 aaKnown RBP14.34□□□□□ -0.11
UPF1-204ENST00000596842 A4GALTQ9NPC4 353 aa14.34□□□□□ -0.11
UPF1-204ENST00000596842 TRPM6Q9BX84 2022 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms