RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PCDH15Q96QU1 1955 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DENND4CQ5VZ89 1909 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 C2orf16Q68DN1 1984 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DUXAA6NLW8 204 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PRAMEF26H0Y7S4 382 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 EPHB6O15197 1021 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 NDUFB8O95169 186 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ADCY5O95622 1261 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 TTC4O95801 387 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 TOP3BO95985 862 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 IFNA2P01563 188 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 FGF2P09038 288 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DLATP10515 647 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PRF1P14222 555 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 HMGA1P17096 107 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ADRA2CP18825 462 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CD22P20273 847 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PAX7P23759 505 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CYP2F1P24903 491 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 USP8P40818 1118 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 FRKP42685 505 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 KCNJ10P78508 379 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 HTD2P86397 168 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PMP22Q01453 160 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 KLC1Q07866 573 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CRYZQ08257 329 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DMPKQ09013 629 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 GAGE2BQ13066 116 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 IFT88Q13099 833 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PAFAH1B3Q15102 231 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DPYSL2Q16555 572 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SGCBQ16585 318 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 AMZ1Q400G9 498 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 GPR33Q49SQ1 333 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 GAGE2EQ4V326 116 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ATP13A5Q4VNC0 1218 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 MS4A13Q5J8X5 152 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 RTL6Q6ICC9 239 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 OR7E24Q6IFN5 339 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 GAGE2AQ6NT46 116 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 WASH2PQ6VEQ5 465 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ZNF782Q6ZMW2 699 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CLEC20AQ6ZU45 233 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CYS1Q717R9 158 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 LRRC70Q7Z2Q7 622 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 MEX3DQ86XN8 651 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CBWD2Q8IUF1 395 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SIAH3Q8IW03 269 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 KLHDC8BQ8IXV7 354 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 RNF113BQ8IZP6 322 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 B4GALNT2Q8NHY0 566 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ELP5Q8TE02 316 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SLC38A5Q8WUX1 472 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 TMEM255BQ8WV15 326 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DNASE2BQ8WZ79 361 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 BCL2L2Q92843 193 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 FGF13Q92913 245 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SLC25A28Q96A46 364 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 FAF2Q96CS3 445 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PCED1BQ96HM7 432 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 TXN2Q99757 166 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 GPA33Q99795 319 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ZNF559Q9BR84 538 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CBWD1Q9BRT8 395 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CARD9Q9H257 536 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ATP13A3Q9H7F0 1226 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 DCLRE1BQ9H816 532 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 WSB2Q9NYS7 404 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 RCC2Q9P258 522 aaKnown RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 MALT1Q9UDY8 824 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 GAGE2DQ9UEU5 116 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 KCNN3Q9UGI6 736 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 MGAT4BQ9UQ53 548 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PRG3Q9Y2Y8 225 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PCDHGB1Q9Y5G3 927 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 UBR5O95071 2799 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 A0A0A6YYC8 382 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CASTOR2A6NHX0 329 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SLC9B1P1A6NJY1 282 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 ANKRD30BLA7E2S9 258 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 F8VP50 259 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 I3L1I5 382 aaPredicted RBP1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 UBXN8O00124 270 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 KLK8O60259 260 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SELENOFO60613 162 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 PROSCO94903 275 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 MFN2O95140 757 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SNX4O95219 450 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CSF2P04141 144 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 FGF1P05230 155 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CHRNGP07510 517 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 RHOCP08134 193 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SMIM18P0DKX4 95 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 RRASP10301 218 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CD27P26842 260 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 SLC6A6P31641 620 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 CSTF2P33240 577 aaKnown RBP eCLIP1.77□□□□□ -2.132e-8■■■■■ 34.9
SMCHD1-211ENST00000584897 CD151P48509 253 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 NPY2RP49146 381 aa1.77□□□□□ -2.13
SMCHD1-211ENST00000584897 FNTAP49354 379 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms