RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 GPR68Q15743 365 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 PRICKLE4Q2TBC4 344 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ENTPD8Q5MY95 495 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 AP1ARQ63HQ0 302 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CD300LDQ6UXZ3 194 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 RRM2BQ7LG56 351 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ARL14Q8N4G2 192 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 IQCF1Q8N6M8 205 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 TRUB1Q8WWH5 349 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 DIO2Q92813 273 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 Q96MT0 163 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 SDF2Q99470 211 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 GPA33Q99795 319 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 MIR1-1HGQ9H1L0 117 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 SEMA4GQ9NTN9 838 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 TMEM131Q92545 1883 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 A0A087WV62 115 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 METTL12A8MUP2 240 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 PLOD3O60568 738 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 PTHP01270 115 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 ALOX5P09917 674 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 NME1P15531 152 aaKnown RBP13.11□□□□□ -0.31
VPS33B-208ENST00000574755 MLLT10P55197 1068 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 RAB38P57729 211 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 EXOSC7Q15024 291 aaKnown RBP13.11□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF829Q3KNS6 432 aaPredicted RBP13.11□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF730Q6ZMV8 503 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 PLEKHM3Q6ZWE6 761 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 SLCO6A1Q86UG4 719 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 MEX3DQ86XN8 651 aaKnown RBP13.11□□□□□ -0.31
VPS33B-208ENST00000574755 GKN2Q86XP6 184 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 CROCCP3Q8IVE0 287 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 TCEANCQ8N8B7 351 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 CDRT4Q8N9R6 151 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 OR8J1Q8NGP2 316 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 RPL3LQ92901 407 aaKnown RBP13.11□□□□□ -0.31
VPS33B-208ENST00000574755 FOXQ1Q9C009 403 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 TAS2R16Q9NYV7 291 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 TVP23BQ9NYZ1 205 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 DNAJC27Q9NZQ0 273 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 MRPS17Q9Y2R5 130 aaKnown RBP13.11□□□□□ -0.31
VPS33B-208ENST00000574755 LAMA1P25391 3075 aa13.11□□□□□ -0.31
VPS33B-208ENST00000574755 FAM170BA6NMN3 283 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 M0R082 166 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 CNOT3O75175 753 aaKnown RBP13.1□□□□□ -0.31
VPS33B-208ENST00000574755 INHBBP09529 407 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 GSTM3P21266 225 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 IFNGR2P38484 337 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 FASLGP48023 281 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 BMXP51813 675 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 FZD5Q13467 585 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 DCST2Q5T1A1 773 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.1□□□□□ -0.31
VPS33B-208ENST00000574755 MCATQ8IVS2 390 aaKnown RBP13.1□□□□□ -0.31
VPS33B-208ENST00000574755 COX18Q8N8Q8 333 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 PIK3R3Q92569 461 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 LGALS12Q96DT0 336 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 MCHR1Q99705 422 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 MAP3K3Q99759 626 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 RBCK1Q9BYM8 510 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 MAT2BQ9NZL9 334 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 TMEM265A0A087WTH1 108 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 EFCAB9A8MZ26 197 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 STX11O75558 287 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 CT62P0C5K7 136 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 HSMCR30P0CW71 290 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 CAPZBP47756 277 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 DUSP8Q13202 625 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 GINS1Q14691 196 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 PLAG1Q6DJT9 500 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF836Q6ZNA1 936 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 C9orf43Q8TAL5 461 aaPredicted RBP13.1□□□□□ -0.31
VPS33B-208ENST00000574755 GPR151Q8TDV0 419 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 BORCS5Q969J3 196 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 ANKRD9Q96BM1 317 aaPredicted RBP13.1□□□□□ -0.31
VPS33B-208ENST00000574755 CRELD1Q96HD1 420 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 SLC38A3Q99624 504 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF350Q9GZX5 532 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 SLC25A19Q9HC21 320 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 DUSP22Q9NRW4 184 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 NTNG1Q9Y2I2 539 aa13.1□□□□□ -0.31
VPS33B-208ENST00000574755 A0A0A6YYC8 382 aaPredicted RBP13.09□□□□□ -0.31
VPS33B-208ENST00000574755 CENPVL1A0A0U1RR11 272 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 A0A1W2PR77 199 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 KRBA1A5PL33 1030 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 AGAP5A6NIR3 686 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 I3L1I5 382 aaPredicted RBP13.09□□□□□ -0.31
VPS33B-208ENST00000574755 CHST10O43529 356 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 OR10H2O60403 315 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 SLC15A1P46059 708 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 GIPRP48546 466 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 CLK1P49759 484 aaKnown RBP13.09□□□□□ -0.31
VPS33B-208ENST00000574755 RPL6Q02878 288 aaKnown RBP13.09□□□□□ -0.31
VPS33B-208ENST00000574755 IRF3Q14653 427 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 MED22Q15528 200 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 EIPR1Q53HC9 387 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 TMEM201Q5SNT2 666 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 PRICKLE2Q7Z3G6 844 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF619Q8N2I2 560 aa13.09□□□□□ -0.31
VPS33B-208ENST00000574755 GNPDA2Q8TDQ7 276 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms