RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SCO2O43819 266 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 ZIC3O60481 467 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 SEC22BO75396 215 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 TMIGD3P0DMS9 266 aaPredicted RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 KRT4P19013 534 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 TACR1P25103 407 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 SRD5A2P31213 254 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 GSTM5P46439 218 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 IST1P53990 364 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 PNLIPRP2P54317 469 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 GAS1P54826 345 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 DNAJB13P59910 316 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 PSG6Q00889 435 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 GAB1Q13480 694 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 CCDC153Q494R4 210 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 ANKRD26P1Q6NSI1 321 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 ENPP6Q6UWR7 440 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 IFNEQ86WN2 208 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 C10orf107Q8IVU9 208 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 C4orf33Q8N1A6 199 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 OR4K17Q8NGC6 315 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 MBD3L2Q8NHZ7 208 aaPredicted RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 LINC01560Q8TB33 94 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.28□□□□□ -0.922e-10■■■■■ 66.2
LDLR-214ENST00000560628 EPS8L3Q8TE67 593 aaKnown RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 FAM222BQ8WU58 562 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 INTS12Q96CB8 462 aaKnown RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 ELP4Q96EB1 424 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 SFXN2Q96NB2 322 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 AMDHD1Q96NU7 426 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 STMN4Q9H169 189 aaPredicted RBP9.28□□□□□ -0.92
LDLR-214ENST00000560628 DSN1Q9H410 356 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 GLIPR2Q9H4G4 154 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 MYNNQ9NPC7 610 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 RASSF1Q9NS23 344 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 OXSMQ9NWU1 459 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 FLRT3Q9NZU0 649 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 MED11Q9P086 117 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 DKKL1Q9UK85 242 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 FIS1Q9Y3D6 152 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 CCL27Q9Y4X3 112 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 WIF1Q9Y5W5 379 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 ARHGAP21Q5T5U3 1957 aa9.28□□□□□ -0.92
LDLR-214ENST00000560628 MPDZO75970 2070 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 A0A087WV62 115 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 TLDC2A0PJX2 215 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 TUBAL3A6NHL2 446 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 A6NNC1 897 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 CLCA1A8K7I4 914 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 UPK1AO00322 258 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 PLOD2O00469 737 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 AKAP10O43572 662 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 COQ9O75208 318 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 RSL1D1O76021 490 aaKnown RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 UROSP10746 265 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 DPP4P27487 766 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 NTSP30990 170 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 GABRA3P34903 492 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 OPRM1P35372 400 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 RFX3P48380 749 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 LHX2P50458 406 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 GFRA1P56159 465 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 MRPS22P82650 360 aaKnown RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 STX5Q13190 355 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 KIAA0040Q15053 153 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 FBXL19-AS1Q494R0 122 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 FLYWCH1Q4VC44 716 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 AAGABQ6PD74 315 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 SPNS3Q6ZMD2 512 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 ZNF551Q7Z340 670 aaPredicted RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 LUZP2Q86TE4 346 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 TDRPQ86YL5 185 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 GCNT2Q8N0V5 402 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 OR5M1Q8NGP8 315 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 FAM76AQ8TAV0 307 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 TRIM44Q96DX7 344 aaPredicted RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 G6PC3Q9BUM1 346 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 RTN4RQ9BZR6 473 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 CLEC4MQ9H2X3 399 aaPredicted RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 CCM2LQ9NUG4 571 aaPredicted RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 DDX18Q9NVP1 670 aaKnown RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 TAS2R7Q9NYW3 318 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 PPP4R1LQ9P1A2 415 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 BAIAP2L1Q9UHR4 511 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 CBLCQ9ULV8 474 aa9.27□□□□□ -0.93
LDLR-214ENST00000560628 C19orf53Q9UNZ5 99 aaPredicted RBP9.27□□□□□ -0.93
LDLR-214ENST00000560628 EXPH5Q8NEV8 1989 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 GXYLT2A0PJZ3 443 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 FAM221AA4D161 298 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 H3BQF6 201 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 SLC28A1O00337 649 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 AZIN1O14977 448 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 GMFGO60234 142 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 FADS1O60427 444 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 RCBTB2O95199 551 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 TGM6O95932 706 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 IL18BPO95998 194 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 LINC00032P0C843 101 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 HK1P19367 917 aa9.26□□□□□ -0.93
LDLR-214ENST00000560628 EVI2BP34910 448 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms