RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DIO2Q92813 273 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 TESCQ96BS2 214 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 NTNG2Q96CW9 530 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 FAM120BQ96EK7 910 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 GIMAP5Q96F15 307 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 SLC35A4Q96G79 324 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 COL21A1Q96P44 957 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 OR52B2Q96RD2 323 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 LMF2Q9BU23 707 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 TTTY12Q9BZ98 90 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 CXorf36Q9H7Y0 433 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 ZDHHC11Q9H8X9 412 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 IL1RL2Q9HB29 575 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 C3orf14Q9HBI5 128 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 NPHS2Q9NP85 383 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 EQTNQ9NQ60 294 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 TUBA8Q9NY65 449 aaPredicted RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 RRP15Q9Y3B9 282 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 GPR45Q9Y5Y3 372 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 DIDO1Q9BTC0 2240 aaKnown RBP8.59□□□□□ -1.03
LDLR-211ENST00000560173 ZNF407Q9C0G0 2248 aa8.59□□□□□ -1.03
LDLR-211ENST00000560173 PRAMEF25A6NGN4 478 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 TTC36A6NLP5 189 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ACOT7O00154 380 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ASNA1O43681 348 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 HS6ST1O60243 411 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 DIAPH2O60879 1101 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 SCN2BO60939 215 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ABCB7O75027 752 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 TRIM3O75382 744 aaPredicted RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 REM1O75628 298 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ACP2P11117 423 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 IDO1P14902 403 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 CASP3P42574 277 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 KIR3DL1P43629 444 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PRKAG1P54619 331 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 NME5P56597 212 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 UFM1P61960 85 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PPIAP62937 165 aaKnown RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 PHC1P78364 1004 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PRR5P85299 388 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PLGLB1Q02325 96 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 EFR3AQ14156 821 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ZNHIT3Q15649 155 aaPredicted RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 DPY19L1Q2PZI1 675 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PGS1Q32NB8 556 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 LSM12Q3MHD2 195 aaKnown RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 CYP27C1Q4G0S4 372 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PDCD4Q53EL6 469 aaKnown RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 SPANXN4Q5MJ08 99 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 EXOSC6Q5RKV6 272 aaKnown RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 TMEM198Q66K66 360 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 NXNQ6DKJ4 435 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 OR4F3Q6IEY1 312 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 MFSD12Q6NUT3 480 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 TMEM81Q6P7N7 255 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 SZRD1Q7Z422 152 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 FGD2Q7Z6J4 655 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 SLC22A16Q86VW1 577 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 CHERPQ8IWX8 916 aaKnown RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 CLECL1Q8IZS7 167 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 GHDCQ8N2G8 530 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 FAM109AQ8N4B1 249 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 TMEM251Q8N6I4 163 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 CDRT4Q8N9R6 151 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 OR4N2Q8NGD1 307 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 OR8J2Q8NGG1 315 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 CEP70Q8NHQ1 597 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PRR7Q8TB68 274 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 SFXN5Q8TD22 340 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 RNF138Q8WVD3 245 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 MARK4Q96L34 752 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 TEX37Q96LM6 180 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ZNF597Q96LX8 424 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 RILPQ96NA2 401 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 NODALQ96S42 347 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ADOQ96SZ5 270 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 DOHHQ9BU89 302 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ANGPTL4Q9BY76 406 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ZNF703Q9H7S9 590 aaPredicted RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 NEUROD4Q9HD90 331 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 Q9N2J8 555 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ZFP64Q9NPA5 681 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 SAR1AQ9NR31 198 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 PLSCR2Q9NRY7 297 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 ZCCHC3Q9NUD5 404 aaKnown RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 BOKQ9UMX3 212 aaPredicted RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 OSGIN2Q9Y236 505 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 OR10H1Q9Y4A9 318 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 DNAJC13O75165 2243 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 NUP214P35658 2090 aaPredicted RBP8.58□□□□□ -1.04
LDLR-211ENST00000560173 ITPR2Q14571 2701 aa8.58□□□□□ -1.04
LDLR-211ENST00000560173 EML6Q6ZMW3 1958 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 NINQ8N4C6 2090 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 A0A0G2JND7 137 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 GXYLT2A0PJZ3 443 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 CFAP73A6NFT4 308 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 C9JVG2 144 aa8.57□□□□□ -1.04
LDLR-211ENST00000560173 E9PBE3 544 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms