RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 XAGE5Q8WWM1 108 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 TTC9Q92623 222 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 PMM1Q92871 262 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 EXTL1Q92935 676 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 TMCO6Q96DC7 493 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 DTNBP1Q96EV8 351 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 SLC35A4Q96G79 324 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 C16orf58Q96GQ5 468 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 RASL10BQ96S79 203 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 SECISBP2Q96T21 854 aaKnown RBP8.53□□□□□ -1.04
LDLR-210ENST00000559340 YIPF4Q9BSR8 244 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 TRIM4Q9C037 500 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 HOXD1Q9GZZ0 328 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.53□□□□□ -1.04
LDLR-210ENST00000559340 NXF5Q9H1B4 397 aaKnown RBP8.53□□□□□ -1.04
LDLR-210ENST00000559340 OR51I1Q9H343 314 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 TRIM45Q9H8W5 580 aaPredicted RBP8.53□□□□□ -1.04
LDLR-210ENST00000559340 TIMMDC1Q9NPL8 285 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 POLE3Q9NRF9 147 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 ARL8BQ9NVJ2 186 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 VAPAQ9P0L0 249 aa8.53□□□□□ -1.04
LDLR-210ENST00000559340 DSPP15924 2871 aaKnown RBP8.52□□□□□ -1.04
LDLR-210ENST00000559340 TRBV5-3A0A0A0MS03 114 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 OR5H15A6NDH6 313 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 OR6C70A6NIJ9 312 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 TMEM200CA6NKL6 621 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 B2RBV5 119 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 C5orf58C9J3I9 102 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 ERVH48-1M5A8F1 160 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 ATXN7O15265 892 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 DNAJA2O60884 412 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 STX11O75558 287 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 PPM1BO75688 479 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 UNC5CO95185 931 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 IL33O95760 270 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 GUSBP08236 651 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 FBXO45P0C2W1 286 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 OR12D1P0DN82 309 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 NR2F1P10589 423 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 ACP2P11117 423 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 ABCD3P28288 659 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 PIGAP37287 484 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 GABPB1Q06547 395 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 RBBP4Q09028 425 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 RAPSNQ13702 412 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 DUSP5Q16690 384 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 ARHGAP11BQ3KRB8 267 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 LACTB2Q53H82 288 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 TBCELQ5QJ74 424 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 EXOSC6Q5RKV6 272 aaKnown RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 GCNT6Q5T4J0 391 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 SLC22A10Q63ZE4 541 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 B3GNTL1Q67FW5 361 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 NANOGP8Q6NSW7 305 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 TNFAIP8L2Q6P589 184 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 ERICH5Q6P6B1 374 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 IGFL2Q6UWQ7 119 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 IGFL3Q6UXB1 125 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 IL20RBQ6UXL0 311 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 RTL4Q6ZR62 310 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 CYP4Z2PQ8N1L4 340 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 BEST3Q8N1M1 668 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 GOLM1Q8NBJ4 401 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 SLC16A11Q8NCK7 471 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 SIMC1Q8NDZ2 872 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 C9orf43Q8TAL5 461 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 OIT3Q8WWZ8 545 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 SLC39A7Q92504 469 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 DIO2Q92813 273 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 CDS1Q92903 461 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 TMBIM1Q969X1 311 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 SPACA9Q96E40 222 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 OMA1Q96E52 524 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 RMND5BQ96G75 393 aaPredicted RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 C5orf34Q96MH7 638 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 COL21A1Q96P44 957 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 NANOGQ9H9S0 305 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 LIN28AQ9H9Z2 209 aaKnown RBP8.52□□□□□ -1.05
LDLR-210ENST00000559340 SLC25A37Q9NYZ2 338 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 CNIH4Q9P003 139 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 SLAMF8Q9P0V8 285 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 LRFN1Q9P244 771 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 P2RX2Q9UBL9 471 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 PCNX3Q9H6A9 2034 aa8.52□□□□□ -1.05
LDLR-210ENST00000559340 WDFY3Q8IZQ1 3526 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 HEATR5AQ86XA9 2040 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 TRAV17A0A0B4J275 112 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 TSPAN2O60636 221 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 GMNNO75496 209 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 UBOX5O94941 541 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 KCNK2O95069 426 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 NADKO95544 446 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 WDPCPO95876 746 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 P04436 131 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 BMP2P12643 396 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 HPGDP15428 266 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 HOXB9P17482 250 aaPredicted RBP8.51□□□□□ -1.05
LDLR-210ENST00000559340 SLC6A2P23975 617 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 SOX3P41225 446 aa8.51□□□□□ -1.05
LDLR-210ENST00000559340 MAN2A2P49641 1150 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms