RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FAM200BP0CF97 657 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GPR89BP0CG08 455 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PDHBP11177 359 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 RPA2P15927 270 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 XRCC1P18887 633 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 TNNI3P19429 210 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 LMO2P25791 158 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PTBP1P26599 531 aaKnown RBP eCLIP1.32□□□□□ -2.2
USP3-209ENST00000558925 CALML3P27482 149 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 DPP4P27487 766 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ADSSP30520 456 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CAPGP40121 348 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 SLC1A4P43007 532 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 MAGEA5P43359 124 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ACADVLP49748 655 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PGFP49763 221 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 RGS4P49798 205 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 SLC7A2P52569 658 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 MFAP2P55001 183 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 LIM2P55344 173 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 HERVK_113P63132 956 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ERVK-8P63133 956 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 IRX1P78414 480 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 IL24Q13007 206 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CHIT1Q13231 466 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CYLC2Q14093 348 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 CD226Q15762 336 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PDK4Q16654 411 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 TMEM44Q2T9K0 475 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 SLC36A3Q495N2 470 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CCDC152Q4G0S7 254 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ZNF311Q5JNZ3 666 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 LINC00242Q5T6M2 205 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ZC2HC1BQ5TFG8 222 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 AGAP7PQ5VUJ5 663 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 SLX4IPQ5VYV7 408 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PRR5LQ6MZQ0 368 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ZNF343Q6P1L6 599 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 DOK6Q6PKX4 331 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CASC1Q6TDU7 716 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 BTNL3Q6UXE8 466 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 APOOLQ6UXV4 268 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 LANCL3Q6ZV70 420 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GPRIN3Q6ZVF9 776 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CYS1Q717R9 158 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 DPY19L4Q7Z388 723 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 NET1Q7Z628 596 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 TSEN54Q7Z6J9 526 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 KIAA1328Q86T90 577 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 RANBP3LQ86VV4 465 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 CATSPER3Q86XQ3 398 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 RNF130Q86XS8 419 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ABCA7Q8IZY2 2146 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 Q8N377 158 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 FAM133AQ8N9E0 248 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 OR52M1Q8NGK5 317 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 FLVCR1-AS1Q8TAF5 88 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CNIH3Q8TBE1 160 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PNPT1Q8TCS8 783 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 HCAR2Q8TDS4 363 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 TBCKQ8TEA7 893 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GIPC3Q8TF64 312 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 LRRC15Q8TF66 581 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GTF3AQ92664 365 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 DLX4Q92988 240 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 C18orf25Q96B23 403 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 DNAJA3Q96EY1 480 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ZNF599Q96NL3 588 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 DUX3Q96PT4 197 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ZNF607Q96SK3 696 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 OPRPNQ99935 248 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 HSD17B14Q9BPX1 270 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CHCHD5Q9BSY4 110 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CABLES2Q9BTV7 478 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ALG12Q9BV10 488 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 ERVK-6Q9BXR3 956 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GON7Q9BXV9 100 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 PUS3Q9BZE2 481 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 ADNPQ9H2P0 1102 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 RIBC2Q9H4K1 309 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 RMND5AQ9H871 391 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GORASP2Q9H8Y8 452 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 MEPEQ9NQ76 525 aaPredicted RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 FARSBQ9NSD9 589 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 ARMCX1Q9P291 453 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CTSZQ9UBR2 303 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 GHRLQ9UBU3 117 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 MLXQ9UH92 298 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 XPO7Q9UIA9 1087 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 MUTYHQ9UIF7 546 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 SNX6Q9UNH7 406 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CHMP2BQ9UQN3 213 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 EXOSC1Q9Y3B2 195 aaKnown RBP1.32□□□□□ -2.2
USP3-209ENST00000558925 CPQQ9Y646 472 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 AP4B1Q9Y6B7 739 aa1.32□□□□□ -2.2
USP3-209ENST00000558925 CUX2O14529 1486 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 CACNA1FO60840 1977 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 IGHV3OR16-10A0A075B7F0 116 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 A0A1B0GTH9 108 aa1.31□□□□□ -2.2
USP3-209ENST00000558925 IQCMA0A1B0GVH7 501 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms