RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C19orf57Q0VDD7 668 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CDK5R2Q13319 367 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 GPR19Q15760 415 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 UBE2UQ5VVX9 321 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 AGAP6Q5VW22 663 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 MLIPQ5VWP3 458 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 USP43Q70EL4 1123 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CEP68Q76N32 757 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 C16orf62Q7Z3J2 963 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 TSPYL5Q86VY4 417 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 WDR5BQ86VZ2 330 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF761Q86XN6 746 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 PLXDC1Q8IUK5 500 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF595Q8IYB9 648 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 TMEFF1Q8IYR6 380 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 HS3ST5Q8IZT8 346 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CA13Q8N1Q1 262 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 KBTBD8Q8NFY9 601 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 APOBEC4Q8WW27 367 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 UCN3Q969E3 161 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 LGALS12Q96DT0 336 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 COL21A1Q96P44 957 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 AGAP4Q96P64 663 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 OR7D2Q96RA2 312 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 GABARAPL3Q9BY60 117 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 AMBRA1Q9C0C7 1298 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 IL21RQ9HBE5 538 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 SLC13A4Q9UKG4 626 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 TMCC3Q9ULS5 477 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 C19orf53Q9UNZ5 99 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 HYKKA2RU49 373 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 AGAP5A6NIR3 686 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 WASHC1A8K0Z3 465 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CYR61O00622 381 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CLDN4O14493 209 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 YKT6O15498 198 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 DUX1O43812 170 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 PRAMEF10O60809 474 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 DIRAS1O95057 198 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CCNB2O95067 398 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 ANGPTL1O95841 491 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 SLC35E2P0CK97 266 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 BCKDHBP21953 392 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 PRKACGP22612 351 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 S100A5P33763 92 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 AVPR1BP47901 424 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 PPM1FP49593 454 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 CSNK1EP49674 416 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 IFITM2Q01629 132 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 DUSP7Q16829 419 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 GPAT3Q53EU6 434 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 LYSMD4Q5XG99 296 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 MFSD12Q6NUT3 480 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF438Q7Z4V0 828 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 KMT5CQ86Y97 462 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 LSM14AQ8ND56 463 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 OR10G2Q8NGC3 310 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 OR4C15Q8NGM1 316 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 MCFD2Q8NI22 146 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 SLC38A4Q969I6 547 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 AHCYL2Q96HN2 611 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF578Q96N58 590 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 MAP3K3Q99759 626 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 PELOQ9BRX2 385 aaKnown RBP11.84□□□□□ -0.51
SHMT2-229ENST00000557348 DUSP23Q9BVJ7 150 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 SYNDIG1Q9H7V2 258 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 KLHL28Q9NXS3 571 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF221Q9UK13 617 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 HCN4Q9Y3Q4 1203 aa11.84□□□□□ -0.51
SHMT2-229ENST00000557348 DSPPQ9NZW4 1301 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SYNDIG1LA6NDD5 238 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 RGS10O43665 173 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 DCNP07585 359 aaKnown RBP11.83□□□□□ -0.52
SHMT2-229ENST00000557348 ALPPL2P10696 532 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 GLB1P16278 677 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 CASP3P42574 277 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 CTSKP43235 329 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 OR1E2P47887 323 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 MAN2A2P49641 1150 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 CDH12P55289 794 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 GNG2P59768 71 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 OLR1P78380 273 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SIM1P81133 766 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SHC2P98077 582 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 GRM7Q14831 915 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SF3B4Q15427 424 aaKnown RBP eCLIP11.83□□□□□ -0.523e-8■■■■■ 35.5
SHMT2-229ENST00000557348 MAPK11Q15759 364 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SYPL1Q16563 259 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 DEFB133Q30KQ1 61 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 ZNF628Q5EBL2 1059 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 RPS26P11Q5JNZ5 115 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-229ENST00000557348 HEPHL1Q6MZM0 1159 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 XKRXQ6PP77 449 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 TSEN54Q7Z6J9 526 aaKnown RBP11.83□□□□□ -0.52
SHMT2-229ENST00000557348 SFTPA2Q8IWL1 248 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 ARHGEF39Q8N4T4 335 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 ASCC1Q8N9N2 400 aaKnown RBP11.83□□□□□ -0.52
SHMT2-229ENST00000557348 CDRT4Q8N9R6 151 aa11.83□□□□□ -0.52
SHMT2-229ENST00000557348 OR5D16Q8NGK9 328 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms