RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TRIM45Q9H8W5 580 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-227ENST00000557269 NANOGQ9H9S0 305 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 GIN1Q9NXP7 522 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 FLRT3Q9NZU0 649 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 CBLCQ9ULV8 474 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 OR10H1Q9Y4A9 318 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 GMEB1Q9Y692 573 aa11.81□□□□□ -0.52
SHMT2-227ENST00000557269 OR5H15A6NDH6 313 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 TSPAN2O60636 221 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 UGT2B11O75310 529 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 PPM1BO75688 479 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 NEURL1O76050 574 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 KCNK2O95069 426 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 ZIC2O95409 532 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 CRATP43155 626 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 RFX3P48380 749 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 KHKP50053 298 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 NUDT2P50583 147 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 OC90Q02509 493 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 PLCXD2Q0VAA5 305 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 OR1C1Q15619 314 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 CYP27C1Q4G0S4 372 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 C8orf82Q6P1X6 216 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 OPN5Q6U736 354 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 ASB18Q6ZVZ8 466 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 SLC34A3Q8N130 599 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 COX18Q8N8Q8 333 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 PCYOX1LQ8NBM8 494 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 MDS2Q8NDY4 140 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 OR10G3Q8NGC4 313 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 C9orf43Q8TAL5 461 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 XAGE5Q8WWM1 108 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 SPACA9Q96E40 222 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 ADOQ96SZ5 270 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 GPATCH1Q9BRR8 931 aaKnown RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 UTP23Q9BRU9 249 aaKnown RBP11.8□□□□□ -0.52
SHMT2-227ENST00000557269 BTBD2Q9BX70 525 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 HES7Q9BYE0 225 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 RNF32Q9H0A6 362 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 ADNPQ9H2P0 1102 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 EFCAB1Q9HAE3 211 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 Q9N2J8 555 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 DUSP22Q9NRW4 184 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 TUBD1Q9UJT1 453 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 ZNF451Q9Y4E5 1061 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 CACNA1GO43497 2377 aa11.8□□□□□ -0.52
SHMT2-227ENST00000557269 TTC36A6NLP5 189 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 CCT8L1PA6NM43 557 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 ERVH48-1M5A8F1 160 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 TNFRSF21O75509 655 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 REM1O75628 298 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 UBOX5O94941 541 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 IL33O95760 270 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 NPPAP01160 153 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 KRT16P08779 473 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 CCL3P10147 92 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 CYP4B1P13584 511 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 GPX2P18283 190 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 SLC6A2P23975 617 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 CYB561P49447 251 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 TNFSF10P50591 281 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 GZMMP51124 257 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 NRG3P56975 720 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 POU6F2P78424 691 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-227ENST00000557269 ARG2P78540 354 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 NTRK2Q16620 822 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 COLEC12Q5KU26 742 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 DCST2Q5T1A1 773 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 HEPHL1Q6MZM0 1159 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 C6orf89Q6UWU4 347 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 ANKFN1Q8N957 763 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 DIO2Q92813 273 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 HGDQ93099 445 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 MAL2Q969L2 176 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 NSL1Q96IY1 281 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 NODALQ96S42 347 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 THUMPD3Q9BV44 507 aaKnown RBP11.79□□□□□ -0.52
SHMT2-227ENST00000557269 MFRPQ9BY79 579 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 SH2D2AQ9NP31 389 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 GID8Q9NWU2 228 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 HPF1Q9NWY4 346 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 CMTM6Q9NX76 183 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 LRFN1Q9P244 771 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 ABI3Q9P2A4 366 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 GMPR2Q9P2T1 348 aaKnown RBP11.79□□□□□ -0.52
SHMT2-227ENST00000557269 LHX6Q9UPM6 363 aa11.79□□□□□ -0.52
SHMT2-227ENST00000557269 CHCHD2Q9Y6H1 151 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-227ENST00000557269 A0A0G2JMM0 328 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 A0A1W2PPB8 328 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 A0A1W2PRS3 328 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 KIR3DP1A8MWS1 328 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ASNA1O43681 348 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 FCMRO60667 390 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 TFPTP0C1Z6 253 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ESRRAP11474 423 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-227ENST00000557269 BMP2P12643 396 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 NAGAP17050 411 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 DSTNP60981 165 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 SLC25A3Q00325 362 aa11.78□□□□□ -0.52
SHMT2-227ENST00000557269 ART3Q13508 389 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms