RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MBD2Q9UBB5 411 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 SLC2A6Q9UGQ3 507 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 TMCC3Q9ULS5 477 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 CLCA3PQ9Y6N3 262 aa3.23□□□□□ -1.89
SCFD1-221ENST00000556534 LRIT2A6NDA9 550 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 G3V3Y1 287 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 TNFSF11O14788 317 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 SMPD2O60906 423 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 TOXO94900 526 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 GUCA1CO95843 209 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 TGFAP01135 160 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 ZBTB25P24278 435 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 TMOD1P28289 359 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 XCR1P46094 333 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 ERVPABLB-1P60509 514 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 SSTP61278 116 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 KIAA0040Q15053 153 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 LIPKQ5VXJ0 399 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 PRR5LQ6MZQ0 368 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 TSEN54Q7Z6J9 526 aaKnown RBP3.22□□□□□ -1.89
SCFD1-221ENST00000556534 FBXO16Q8IX29 292 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-221ENST00000556534 Q8N7P7 452 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 B3GALT6Q96L58 329 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 HCAR1Q9BXC0 346 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 FAM124BQ9H5Z6 455 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-221ENST00000556534 NYAP2Q9P242 653 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 DNPEPQ9ULA0 475 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 NUDCQ9Y266 331 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 PLEKHA6Q9Y2H5 1048 aa3.22□□□□□ -1.89
SCFD1-221ENST00000556534 CFAP65Q6ZU64 1925 aaKnown RBP3.22□□□□□ -1.89
SCFD1-221ENST00000556534 A0A0J9YVX5 310 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 A0A1W2PNU3 283 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 FAM220BPB1ANY3 271 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 C11orf98E9PRG8 122 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 HDAC3O15379 428 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 NUDT21O43809 227 aaKnown RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 LCMT2O60294 686 aaKnown RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 HSF2BPO75031 334 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 SDC3O75056 442 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 STK17BO94768 372 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 TRIM16O95361 564 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 CXCL10P02778 98 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 GSTA1P08263 222 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 GHRP10912 638 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 KIF5BP33176 963 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 RFC2P35250 354 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 MAGEA4P43358 317 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 RGRP47804 291 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 RAG2P55895 527 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 KLHL30Q0D2K2 578 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ASAH1Q13510 395 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ACSF3Q4G176 576 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 C12orf60Q5U649 245 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 OR6B2Q6IFH4 312 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 UNC5DQ6UXZ4 953 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 WDR88Q6ZMY6 472 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ADGRD2Q7Z7M1 963 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ERICH1Q86X53 443 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 BATF2Q8N1L9 274 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 KDM8Q8N371 416 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ARL6IP6Q8N6S5 226 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 LRRC17Q8N6Y2 441 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ANKRD20A12PQ8NF67 263 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 OR13F1Q8NGS4 319 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 OR52J3Q8NH60 311 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ZNF564Q8TBZ8 553 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 TFB1MQ8WVM0 346 aaKnown RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 CCDC51Q96ER9 411 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 CYYR1Q96J86 154 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 SAMD8Q96LT4 415 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 C16orf45Q96MC5 204 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 TSPAN18Q96SJ8 248 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 MAPKAP1Q9BPZ7 522 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 DDX47Q9H0S4 455 aaKnown RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 OPN3Q9H1Y3 402 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-221ENST00000556534 IL17CQ9P0M4 197 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 KCNN3Q9UGI6 736 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 CCPG1Q9ULG6 757 aa3.21□□□□□ -1.9
SCFD1-221ENST00000556534 ATP8B3O60423 1300 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 CFAP73A6NFT4 308 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 EPOPA6NHQ4 379 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 H3BMH7 237 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 IGSF6O95976 241 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 CCDC192P0DO97 292 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 GNSP15586 552 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 PRKAR2BP31323 418 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 SLC6A8P48029 635 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 CD47Q08722 323 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 BNIP1Q12981 228 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 NME3Q13232 169 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 EIF2B1Q14232 305 aaKnown RBP3.2□□□□□ -1.9
SCFD1-221ENST00000556534 ZSWIM7Q19AV6 140 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 AGKQ53H12 422 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 SLC22A10Q63ZE4 541 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 ZNF677Q86XU0 584 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 PHYHIPQ92561 330 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 NUS1Q96E22 293 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 DNAJA3Q96EY1 480 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 KCNK16Q96T55 309 aa3.2□□□□□ -1.9
SCFD1-221ENST00000556534 COQ7Q99807 217 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms