RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DIRAS1O95057 198 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 PGRP06401 933 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 GP1BAP07359 652 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 FHP07954 510 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 ATP1B2P14415 290 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 NCF1P14598 390 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 GLB1P16278 677 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 GPC1P35052 558 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 GGT2P36268 569 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 RPIAP49247 311 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 CLCN7P51798 805 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 IL2P60568 153 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 CCL7P80098 99 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 POU4F3Q15319 338 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 FAM174BQ3ZCQ3 159 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 C14orf28Q4W4Y0 310 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 PYDC2Q56P42 97 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 TMEM81Q6P7N7 255 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 TMEM220Q6QAJ8 160 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 KLHL17Q6TDP4 642 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 GPAT4Q86UL3 456 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 TMPRSS12Q86WS5 348 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 CALHM3Q86XJ0 350 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF761Q86XN6 746 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 ADGRG3Q86Y34 549 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 TRAPPC5Q8IUR0 188 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 LURAP1LQ8IV03 231 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 LINC00469Q8N7U9 141 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 OR8K5Q8NH50 307 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 VANGL1Q8TAA9 524 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 CD200R1Q8TD46 325 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 SLC37A2Q8TED4 501 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 MARC2Q969Z3 335 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 ZC3HAV1LQ96H79 300 aaKnown RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 KCNC2Q96PR1 638 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 C1QTNF3Q9BXJ4 246 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 OSGEPL1Q9H4B0 414 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 THUMPD1Q9NXG2 353 aaKnown RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 TSR3Q9UJK0 312 aaKnown RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 ING4Q9UNL4 249 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 DIMT1Q9UNQ2 313 aaKnown RBP7.21□□□□□ -1.26
LIMA1-216ENST00000552909 DHRS7Q9Y394 339 aa7.21□□□□□ -1.26
LIMA1-216ENST00000552909 ARPC4-TTLL3A0A0A6YYG9 625 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 PRAMEF33A0A0G2JMD5 474 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 A6NCN8 305 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TRABD2BA6NFA1 517 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 NCF1BA6NI72 391 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 PRR19A6NJB7 356 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 NCF1CA8MVU1 366 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ORC5O43913 435 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CCNDBP1O95273 360 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TSPAN12O95859 305 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 MT-CO3P00414 261 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 RAF1P04049 648 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CD9P21926 228 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 EVI2BP34910 448 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CCT3P49368 545 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 AGTR2P50052 363 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 E2F1Q01094 437 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ALDH6A1Q02252 535 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF33BQ06732 778 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 LARS2Q15031 903 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GRK1Q15835 563 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 COL28A1Q2UY09 1125 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 AP5B1Q2VPB7 878 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CLLU1Q5K131 121 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CDCP2Q5VXM1 449 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TRIQKQ629K1 86 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 OR4F3Q6IEY1 312 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 Q6ZPB1 254 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 FAM83HQ6ZRV2 1179 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 TMPRSS9Q7Z410 1059 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 LRRTM4Q86VH4 590 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ZZZ3Q8IYH5 903 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 NKAPQ8N5F7 415 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 LILRA3Q8N6C8 439 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 C19orf18Q8NEA5 215 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 LKAAEAR1Q8TD35 194 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF431Q8TF32 576 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 NAT6Q93015 286 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 FBXW5Q969U6 566 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 KIAA1143Q96AT1 154 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 LINGO1Q96FE5 620 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 DIRAS2Q96HU8 199 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 QRFPRQ96P65 431 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 OR5M11Q96RB7 305 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 RACGAP1Q9H0H5 632 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 RDH14Q9HBH5 336 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ABCB9Q9NP78 766 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 RBFOX1Q9NWB1 397 aaKnown RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 SIRT5Q9NXA8 310 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ATXN7L1Q9ULK2 861 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CLCA2Q9UQC9 943 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 MAN2B2Q9Y2E5 1009 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 CACNA1BQ00975 2339 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 ATMQ13315 3056 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 AHCTF1Q8WYP5 2266 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 KMT2BQ9UMN6 2715 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-216ENST00000552909 IGLV3-16A0A075B6K0 115 aa7.2□□□□□ -1.26
LIMA1-216ENST00000552909 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms