RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TMBIM1Q969X1 311 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ZNF837Q96EG3 531 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 G6PC3Q9BUM1 346 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 FAIM2Q9BWQ8 316 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 OR2B2Q9GZK3 357 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 NMRK1Q9NWW6 199 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 KLRF1Q9NZS2 232 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TMEM216Q9P0N5 145 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 VPS29Q9UBQ0 182 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 PRODH2Q9UF12 536 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 TRPS1Q9UHF7 1281 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ZNF180Q9UJW8 692 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 UTS2RQ9UKP6 389 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 DLGAP4Q9Y2H0 992 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 GPR55Q9Y2T6 319 aaPredicted RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 ZNF780BQ9Y6R6 833 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 KIAA1549Q9HCM3 1950 aa7.69□□□□□ -1.18
USP28-215ENST00000545608 ANKHD1Q8IWZ3 2542 aaKnown RBP7.69□□□□□ -1.18
USP28-215ENST00000545608 TACC2O95359 2948 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 AKAP9Q99996 3911 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ARHGAP21Q5T5U3 1957 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 MPDZO75970 2070 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 FRG2CA6NGY1 282 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 OR6C70A6NIJ9 312 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 CLCA1A8K7I4 914 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 C17orf51A8MQB3 221 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 B4DXG7 233 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 DLX3O60479 287 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 TSPAN2O60636 221 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 SUPT7LO94864 414 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 RCBTB2O95199 551 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ESRRBO95718 433 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 IL3P08700 152 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 SNRPAP09012 282 aaKnown RBP7.68□□□□□ -1.18
USP28-215ENST00000545608 CT45A8P0DMV1 189 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 CT45A9P0DMV2 189 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 GCAP28676 217 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 HTR6P50406 440 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 GFRA1P56159 465 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 CORO7P57737 925 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ADAM8P78325 824 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 SORDQ00796 357 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 WHAMMP3Q1A5X7 153 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 PRSS53Q2L4Q9 553 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 KRTAP21-3Q3LHN1 58 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 CT45A2Q5DJT8 189 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ZNF678Q5SXM1 525 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 OR5M10Q6IEU7 315 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ENPP6Q6UWR7 440 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 PAMR1Q6UXH9 720 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 NPSR1Q6W5P4 371 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 TAOK1Q7L7X3 1001 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 PLCZ1Q86YW0 608 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 OR9A2Q8NGT5 310 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ZNF675Q8TD23 568 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 EXOSC8Q96B26 276 aaKnown RBP7.68□□□□□ -1.18
USP28-215ENST00000545608 INTS12Q96CB8 462 aaKnown RBP7.68□□□□□ -1.18
USP28-215ENST00000545608 TMCO6Q96DC7 493 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 MBD6Q96DN6 1003 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 SLC35A4Q96G79 324 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 APIPQ96GX9 242 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 COL21A1Q96P44 957 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 TMEM237Q96Q45 408 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 ADOQ96SZ5 270 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 FMO2Q99518 471 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 RBM24Q9BX46 236 aaKnown RBP7.68□□□□□ -1.18
USP28-215ENST00000545608 ACPTQ9BZG2 426 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 GSX1Q9H4S2 264 aaPredicted RBP7.68□□□□□ -1.18
USP28-215ENST00000545608 PLEKHF2Q9H8W4 249 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 PFDN4Q9NQP4 134 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 TAS2R10Q9NYW0 307 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 MCM8Q9UJA3 840 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 FBXL2Q9UKC9 423 aa7.68□□□□□ -1.18
USP28-215ENST00000545608 A0A087WUV0 522 aaPredicted RBP7.67□□□□□ -1.18
USP28-215ENST00000545608 A0A1W2PPR1 153 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 H0Y3Z8 333 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 PLOD2O00469 737 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 PCDH7O60245 1069 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 ZIC3O60481 467 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 ULK1O75385 1050 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 ERN1O75460 977 aaKnown RBP7.67□□□□□ -1.18
USP28-215ENST00000545608 BCAS2O75934 225 aaPredicted RBP7.67□□□□□ -1.18
USP28-215ENST00000545608 ATE1O95260 518 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 KRT6AP02538 564 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 KRT6BP04259 564 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 HSD3B1P14060 373 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 DRD2P14416 443 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 HOXB4P17483 251 aaPredicted RBP7.67□□□□□ -1.18
USP28-215ENST00000545608 TAC1P20366 129 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 IMPDH1P20839 514 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 TCEA1P23193 301 aaKnown RBP7.67□□□□□ -1.18
USP28-215ENST00000545608 HSD3B2P26439 372 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 HMOX2P30519 316 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 SRD5A2P31213 254 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 GCKP35557 465 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 KRT6CP48668 564 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 LHX2P50458 406 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 GAS1P54826 345 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 PPP2R2AP63151 447 aa7.67□□□□□ -1.18
USP28-215ENST00000545608 BTKQ06187 659 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms