RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 IPPKQ9H8X2 491 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 SHISA8B8ZZ34 492 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 SEC14L2O76054 403 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 RCBTB2O95199 551 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 METTL18O95568 372 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 IFNGP01579 166 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 GALTP07902 379 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ITGAMP11215 1152 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 EPHA3P29320 983 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 RFC3P40938 356 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 CD200P41217 278 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 PKIAP61925 76 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 CACNG1Q06432 222 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 BAK1Q16611 211 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 GUK1Q16774 197 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 MPPE1Q53F39 396 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 OXLD1Q5BKU9 147 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 CLEC6AQ6EIG7 209 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 SMARCD3Q6STE5 483 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 C16orf89Q6UX73 402 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 PGAM4Q8N0Y7 254 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 LMO3Q8TAP4 145 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ASB5Q8WWX0 329 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ZNF778Q96MU6 729 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 TMPRSS5Q9H3S3 457 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 BEX1Q9HBH7 125 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ZNF160Q9HCG1 818 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 SAYSD1Q9NPB0 183 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 WDR81Q562E7 1941 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 INPP4BO15327 924 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 RPN2P04844 631 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 THRBP10828 461 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 FUT1P19526 365 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 LHCGRP22888 699 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 TEDDM1Q5T9Z0 273 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 BIVMQ86UB2 503 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 NAT16Q8N8M0 369 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 MRPL43Q8N983 215 aaKnown RBP8.4□□□□□ -1.06
VPS13D-212ENST00000543766 OR7A2PQ8NGA2 310 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 COQ8AQ8NI60 647 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 SUN3Q8TAQ9 357 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 HMGB4Q8WW32 186 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 CASD1Q96PB1 797 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 DCLRE1CQ96SD1 692 aaKnown RBP8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ACSS3Q9H6R3 686 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ZDHHC6Q9H6R6 413 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 IL17RBQ9NRM6 502 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 COL20A1Q9P218 1284 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 ASB1Q9Y576 335 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 FOCADQ5VW36 1801 aa8.4□□□□□ -1.06
VPS13D-212ENST00000543766 A0A1W2PQL4 384 aaPredicted RBP8.4□□□□□ -1.07
VPS13D-212ENST00000543766 TCRBV16S1A1N1A0A5B0 115 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 C17orf102A2RUQ5 167 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 MROH6A6NGR9 719 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 TMEM200CA6NKL6 621 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 DRGXA6NNA5 263 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 VAPBO95292 243 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 IFNA10P01566 189 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 C1QAP02745 245 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 ALPLP05186 524 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 UROSP10746 265 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 QARSP47897 775 aaKnown RBP8.4□□□□□ -1.07
VPS13D-212ENST00000543766 BAIAP2L2Q6UXY1 529 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 PTAR1Q7Z6K3 402 aaPredicted RBP8.4□□□□□ -1.07
VPS13D-212ENST00000543766 LRRC56Q8IYG6 542 aaPredicted RBP8.4□□□□□ -1.07
VPS13D-212ENST00000543766 GPRC5AQ8NFJ5 357 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 OR8J3Q8NGG0 315 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 GLYATL2Q8WU03 294 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 TOMM40LQ969M1 308 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 GINS4Q9BRT9 223 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 AKIP1Q9NQ31 210 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 MTMR10Q9NXD2 777 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 SCN3BQ9NY72 215 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 GPR83Q9NYM4 423 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 ONECUT1Q9UBC0 465 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 SLCO3A1Q9UIG8 710 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 TAF1P21675 1872 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 NAV1Q8NEY1 1877 aa8.4□□□□□ -1.07
VPS13D-212ENST00000543766 ELOA3CA0A087WX78 387 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-212ENST00000543766 ELOA3DA6NLF2 546 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-212ENST00000543766 KDM4EB2RXH2 506 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-212ENST00000543766 SPATA31C2B4DYI2 1134 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 E7ESA3 106 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 M0R143 59 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 GPR25O00155 361 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 SUSD5O60279 629 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 ZNF623O75123 536 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 BMP4P12644 408 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 CCL2P13500 99 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 GSTM3P21266 225 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 UBA1P22314 1058 aaKnown RBP8.39□□□□□ -1.07
VPS13D-212ENST00000543766 CXCR1P25024 350 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 NUMBP49757 651 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 PPT1P50897 306 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 FPGSQ05932 587 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 BST2Q10589 180 aaKnown RBP8.39□□□□□ -1.07
VPS13D-212ENST00000543766 TSPAN31Q12999 210 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 ZNF630Q2M218 657 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-212ENST00000543766 TMEM236Q5W0B7 351 aa8.39□□□□□ -1.07
VPS13D-212ENST00000543766 LINC00299Q6ZSB3 139 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms