RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 FOLH1BQ9HBA9 442 aa12.89□□□□□ -0.35
VPS33A-208ENST00000543633 C5AR2Q9P296 337 aa12.89□□□□□ -0.35
VPS33A-208ENST00000543633 KLF15Q9UIH9 416 aa12.89□□□□□ -0.35
VPS33A-208ENST00000543633 ERVH48-1M5A8F1 160 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 MAN2B1O00754 1011 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 HMGN1P05114 100 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 BUD31P41223 144 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ATP12AP54707 1039 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 PGGHGQ32M88 737 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 POM121L1PQ3SYA9 428 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 CCNJQ5T5M9 372 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 NDUFAF5Q5TEU4 345 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ADAMTSL4Q6UY14 1074 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 UTS2BQ765I0 119 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ERN2Q76MJ5 926 aaKnown RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 GID4Q8IVV7 300 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 RAB42Q8N4Z0 105 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ACOT11Q8WXI4 607 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 HYLS1Q96M11 299 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 BBS4Q96RK4 519 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF649Q9BS31 505 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 MENTQ9BUN1 341 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ACAT2Q9BWD1 397 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 RNF32Q9H0A6 362 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 MTG2Q9H4K7 406 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 KCNK12Q9HB15 430 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 IL20Q9NYY1 176 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 PTTG3PQ9NZH4 202 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 SLC13A4Q9UKG4 626 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 PLAGL1Q9UM63 463 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 CDH10Q9Y6N8 788 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 CCL16O15467 120 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 LZTS3O60299 673 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 MOSPD3O75425 235 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 RGS9O75916 674 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 NFATC1O95644 943 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 PKLRP30613 574 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 HTR2BP41595 481 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 SSR2P43308 183 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 NCBP2P52298 156 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 SHC2P98077 582 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 P2RY14Q15391 338 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 TEAD2Q15562 447 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 CCDC58Q4VC31 144 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF697Q5TEC3 545 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ZNF782Q6ZMW2 699 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 GET4Q7L5D6 327 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 LRRC28Q86X40 367 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 TP53I13Q8NBR0 393 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 OR8D1Q8WZ84 308 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 ARRDC3Q96B67 414 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 OTUB1Q96FW1 271 aaPredicted RBP12.88□□□□□ -0.35
VPS33A-208ENST00000543633 BEX2Q9BXY8 128 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 LINC00597Q9H2U6 94 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 IL23AQ9NPF7 189 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 NLKQ9UBE8 527 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 SLC27A6Q9Y2P4 619 aa12.88□□□□□ -0.35
VPS33A-208ENST00000543633 A0A1W2PPV9 198 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 PRR23AA6NEV1 266 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 INMT-MINDY4F8WBC2 141 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 KLF4O43474 513 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 CPNE3O75131 537 aaKnown RBP12.87□□□□□ -0.35
VPS33A-208ENST00000543633 LALBAP00709 142 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 CISD3P0C7P0 127 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 ACP5P13686 325 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 PRKAR1BP31321 381 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 SOX18P35713 384 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 NUDT1P36639 197 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 RNF144AP50876 292 aaPredicted RBP12.87□□□□□ -0.35
VPS33A-208ENST00000543633 PRR5P85299 388 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 MRPL28Q13084 256 aaKnown RBP12.87□□□□□ -0.35
VPS33A-208ENST00000543633 TRAM1Q15629 374 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 EOGTQ5NDL2 527 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 PAMR1Q6UXH9 720 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 RRM2BQ7LG56 351 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 SZRD1Q7Z422 152 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 LRRTM4Q86VH4 590 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 DEDD2Q8WXF8 326 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS33A-208ENST00000543633 IRF2BPLQ9H1B7 796 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 RERGLQ9H628 205 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 KRCC1Q9NPI7 259 aaPredicted RBP12.87□□□□□ -0.35
VPS33A-208ENST00000543633 KLHL28Q9NXS3 571 aa12.87□□□□□ -0.35
VPS33A-208ENST00000543633 EDDM13A0A1B0GTR0 161 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 GSAPA4D1B5 854 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 NDUFB5O43674 189 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 OR1F1O43749 312 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 OR2B3O76000 313 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 FGF18O76093 207 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 OR5F1O95221 314 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CHRM5P08912 532 aaPredicted RBP12.86□□□□□ -0.35
VPS33A-208ENST00000543633 ADRB3P13945 408 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 RBMS1P29558 406 aaKnown RBP12.86□□□□□ -0.35
VPS33A-208ENST00000543633 P2RX3P56373 397 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 CSNK1G2P78368 415 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 GPLD1P80108 840 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 HSD17B12Q53GQ0 312 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 HBMQ6B0K9 141 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 VASNQ6EMK4 673 aa12.86□□□□□ -0.35
VPS33A-208ENST00000543633 MRM1Q6IN84 353 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms