RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ALDOAP04075 364 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 IGKV3-11P04433 115 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 C8GP07360 202 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 APRTP07741 180 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ABCB1P08183 1280 aaPredicted RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PEPDP12955 493 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ETS1P14921 441 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ALOX15P16050 662 aaPredicted RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 IL32P24001 234 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 GRK2P25098 689 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 CNTFP26441 200 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 MGAT1P26572 445 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 NOS3P29474 1203 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SSTR4P31391 388 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FDFT1P37268 417 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PDLIM4P50479 330 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FABP6P51161 128 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SUCLG1P53597 346 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SLC37A1P57057 533 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 REEP5Q00765 189 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF844Q08AG5 666 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FGFBP1Q14512 234 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 EBPQ15125 230 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 STK11Q15831 433 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 GFOD2Q3B7J2 385 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 DEPDC1Q5TB30 811 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 UGT3A1Q6NUS8 523 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SLC30A6Q6NXT4 461 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 CASC4Q6P4E1 433 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ZNF549Q6P9A3 640 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 CENPUQ71F23 418 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 STK32CQ86UX6 486 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 THOC6Q86W42 341 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 DENND6AQ8IWF6 608 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FBXL14Q8N1E6 418 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 LRRC17Q8N6Y2 441 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SEMA6DQ8NFY4 1073 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 OR2L5Q8NG80 312 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 ZFAND2BQ8WV99 257 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 WFDC12Q8WWY7 111 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 RIT1Q92963 219 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 NXNL1Q96CM4 212 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FBXL20Q96IG2 436 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 Q96M66 194 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 LRGUKQ96M69 825 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 CCDC42Q96M95 316 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FOXN4Q96NZ1 517 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 NODALQ96S42 347 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 KCNJ15Q99712 375 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PKP2Q99959 881 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 KRTAP4-12Q9BQ66 201 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PIMREGQ9BSJ6 248 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 OSBPL11Q9BXB4 747 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TRIM54Q9BYV2 358 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TRIM2Q9C040 744 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 OR2B2Q9GZK3 357 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 IPPKQ9H8X2 491 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 RNF122Q9H9V4 155 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PELI2Q9HAT8 420 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 EMC7Q9NPA0 242 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 PLSCR4Q9NRQ2 329 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SNX15Q9NRS6 342 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TREX1Q9NSU2 369 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FBXO34Q9NWN3 711 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 BFARQ9NZS9 450 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TRMT6Q9UJA5 497 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 FBXL2Q9UKC9 423 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TFR2Q9UP52 801 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 EXO1Q9UQ84 846 aaKnown RBP4.25□□□□□ -1.73
LIMS1-214ENST00000542845 SLC22A14Q9Y267 594 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 GPR52Q9Y2T5 361 aa4.25□□□□□ -1.73
LIMS1-214ENST00000542845 TRRAPQ9Y4A5 3859 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 A0A0A6YYJ9 748 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 IGHV4-61A0A0C4DH41 118 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 OR6C76A6NM76 312 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 EFCAB8A8MWE9 144 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SLCO1B7G3V0H7 640 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 ABCD4O14678 606 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 GMFGO60234 142 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PRKRAO75569 313 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 AQP8O94778 261 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 HAUS5O94927 633 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 OPN1LWP04000 364 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 C1GALT1C1LP0DN25 315 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 HK1P19367 917 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 SRD5A2P31213 254 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 TTKP33981 857 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NR4A2P43354 598 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NPY2RP49146 381 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 RGS4P49798 205 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 EFNA4P52798 201 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PGGT1BP53609 377 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 NAP1L1P55209 391 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 CLDN15P56746 228 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 EEFSECP57772 596 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 RPS3AP61247 264 aaKnown RBP4.24□□□□□ -1.73
LIMS1-214ENST00000542845 PLIN5Q00G26 463 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 TGM3Q08188 693 aa4.24□□□□□ -1.73
LIMS1-214ENST00000542845 THOC5Q13769 683 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms