RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 RFX4Q33E94 735 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 COQ5Q5HYK3 327 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 CCDC190Q86UF4 302 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 OR8D1Q8WZ84 308 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 CPNE4Q96A23 557 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 WRAP53Q9BUR4 548 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 MRPS30Q9NP92 439 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 DYRK4Q9NR20 520 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 GULP1Q9UBP9 304 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 MIOXQ9UGB7 285 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 AUP1Q9Y679 476 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 COL4A2P08572 1712 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 K7ESM1 405 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 WNT9AO14904 365 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 TOX3O15405 576 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 MED6O75586 246 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 PCDH8O95206 1070 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF682O95780 498 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 OTCP00480 354 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 VIPP01282 170 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 C8GP07360 202 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 LAP3P28838 519 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 PREPP48147 710 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 CCT3P49368 545 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 PRLHRP49683 370 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 RAB25P57735 213 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ABRAXAS2Q15018 415 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 QPRTQ15274 297 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 TMEM52BQ4KMG9 183 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 PARM1Q6UWI2 310 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 TMPRSS11AQ6ZMR5 421 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 GCNT7Q6ZNI0 430 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF765Q7L2R6 523 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 SPATA19Q7Z5L4 167 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 CAMKMTQ7Z624 323 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 GLCCI1Q86VQ1 547 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 OR8J2Q8NGG1 315 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF675Q8TD23 568 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ASB15Q8WXK1 588 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 DNASE1L2Q92874 299 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 FGF14Q92915 247 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ZDHHC16Q969W1 377 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF583Q96ND8 569 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 NPAS1Q99742 590 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 KXD1Q9BQD3 176 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 CNPPD1Q9BV87 410 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 PRSS16Q9NQE7 514 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 VNN3Q9NY84 501 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 MSRAQ9UJ68 235 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ACSL5Q9ULC5 683 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 RNF24Q9Y225 148 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 HSPE1-MOB4S4R3N1 261 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 PRRC2BQ5JSZ5 2229 aaKnown RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 GSAPA4D1B5 854 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 OR2AG2A6NM03 316 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CXCR6O00574 342 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ANKRD28O15084 1053 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC16A5O15375 505 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SERPINA1P01009 418 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CKMT1AP12532 417 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 RPS5P46782 204 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TGM4P49221 684 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SCN1BQ07699 218 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC14A1Q13336 389 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF284Q2VY69 593 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 C6orf136Q5SQH8 315 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 FAM131AQ6UXB0 335 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 Q6ZPB1 254 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 CREB3L2Q70SY1 520 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 UBE2R2Q712K3 238 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 GPAT4Q86UL3 456 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PHACTR4Q8IZ21 702 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ELSPBP1Q96BH3 223 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 AP2M1Q96CW1 435 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 KLHL15Q96M94 604 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 P2RY13Q9BPV8 354 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 WDR77Q9BQA1 342 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SOX7Q9BT81 388 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 C11orf54Q9H0W9 315 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PPIL3Q9H2H8 161 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 RNF121Q9H920 327 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 NIT2Q9NQR4 276 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 HEBP1Q9NRV9 189 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 C19orf12Q9NSK7 152 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PLCXD1Q9NUJ7 323 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 IMPAD1Q9NX62 359 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 PDP1Q9P0J1 537 aaPredicted RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 KCNE1BA0A087WTH5 132 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 A0A0B4J293 547 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 TEX13CA0A0J9YWL9 993 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC5A10A0PJK1 596 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 B4DXG7 233 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 J3QW42 95 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 OPN1LWP04000 364 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF806P0C7X5 589 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 C6P13671 934 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 SSTR4P31391 388 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 DAPP51397 102 aa7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 BOP1Q14137 746 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-221ENST00000542407 MLC1Q15049 377 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms