RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 KATNB1Q9BVA0 655 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 PLA2G12AQ9BZM1 189 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 PCBD2Q9H0N5 130 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 OR51I1Q9H343 314 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 TRPC4Q9UBN4 977 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 FBXW2Q9UKT8 454 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 BRWD1Q9NSI6 2320 aa11.76□□□□□ -0.53
RNF4-222ENST00000541204 A0A1W2PRQ8 180 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 A0A1W2PS29 197 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 ISM1B1AKI9 464 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 SCO2O43819 266 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 MYL12AP19105 171 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 MYL9P24844 172 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 KIR2DL3P43628 341 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 SLC9A3P48764 834 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 WNT4P56705 351 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 SMIM11AP58511 58 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 CRTC2Q53ET0 693 aaPredicted RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 GPAT3Q53EU6 434 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 RDH10Q8IZV5 341 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 VWA5B2Q8N398 1253 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 TBC1D19Q8N5T2 526 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 ZFP41Q8N8Y5 198 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 ATP6V1C2Q8NEY4 427 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 OR52P1PQ8NH57 321 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 RASSF5Q8WWW0 418 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 SLC9A6Q92581 669 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 TSACCQ96A04 125 aaPredicted RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 RNF170Q96K19 258 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 EGLN3Q9H6Z9 239 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 ANKRA2Q9H9E1 313 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 SLC6A20Q9NP91 592 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 MAN2C1Q9NTJ4 1040 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 CLEC1BQ9P126 229 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 MSRAQ9UJ68 235 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 DNMT3AQ9Y6K1 912 aaPredicted RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 VCANP13611 3396 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 LRIT2A6NDA9 550 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 CACNB4O00305 520 aaPredicted RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 PLA2G10O15496 165 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 PLRG1O43660 514 aaKnown RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 LGI1O95970 557 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 NR2F1P10589 423 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 GAS1P54826 345 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 LRRC32Q14392 662 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.75□□□□□ -0.53
RNF4-222ENST00000541204 ENPP7Q6UWV6 458 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 KIAA1324Q6UXG2 1013 aaKnown RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 PRR23CQ6ZRP0 262 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 GDPD1Q8N9F7 314 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 OR6T1Q8NGN1 323 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 MRPL38Q96DV4 380 aaKnown RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 ZBED6CLQ96FA7 236 aaPredicted RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 ZSCAN32Q9NX65 697 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 COMMD3Q9UBI1 195 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 P2RX2Q9UBL9 471 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 TBC1D29Q9UFV1 150 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 NDRG2Q9UN36 371 aaKnown RBP11.75□□□□□ -0.53
RNF4-222ENST00000541204 SLC17A4Q9Y2C5 497 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 HEATR5BQ9P2D3 2071 aa11.75□□□□□ -0.53
RNF4-222ENST00000541204 A0A1W2PQF6 199 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 POLR1CO15160 346 aaPredicted RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 EPPINO95925 133 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 NR2F6P10588 404 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 DDX5P17844 614 aaKnown RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 CD79BP40259 229 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 CDK5Q00535 292 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 ALDH6A1Q02252 535 aaKnown RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 RPE65Q16518 533 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 PLK5Q496M5 336 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 Q5BKY6 102 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 ABI3BPQ7Z7G0 1075 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 NOXA1Q86UR1 476 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 GLCCI1Q86VQ1 547 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 LSRQ86X29 649 aaPredicted RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 KIF18BQ86Y91 864 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 FRMD1Q8N878 549 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 RNFT2Q96EX2 444 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 FRMD6Q96NE9 622 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 CDCA3Q99618 268 aaPredicted RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 GDF15Q99988 308 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 PRR14Q9BWN1 585 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 RNF121Q9H920 327 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 MALT1Q9UDY8 824 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 SF3B6Q9Y3B4 125 aaKnown RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 PGRMC2O15173 223 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 TRAPPC2P0DI81 140 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 TRAPPC2BP0DI82 140 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 APEX1P27695 318 aaKnown RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 PEBP1P30086 187 aaKnown RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 PKLRP30613 574 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 FRKP42685 505 aaPredicted RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 NCBP2P52298 156 aaKnown RBP eCLIP11.74□□□□□ -0.535e-11■■■□□ 14.7
RNF4-222ENST00000541204 EFNB1P98172 346 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 FABP5Q01469 135 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 COX10Q12887 443 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 SNAP47Q5SQN1 464 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 TYW3Q6IPR3 259 aaKnown RBP11.74□□□□□ -0.53
RNF4-222ENST00000541204 KIAA1161Q6NSJ0 714 aa11.74□□□□□ -0.53
RNF4-222ENST00000541204 PAMR1Q6UXH9 720 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms