RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 POLDIP3Q9BY77 421 aaKnown RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 MTHFD2LQ9H903 347 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 FBXO8Q9NRD0 319 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 C2orf42Q9NWW7 574 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 RABL2AQ9UBK7 228 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.88□□□□□ -0.35
RTN3-210ENST00000540798 NDRG2Q9UN36 371 aaKnown RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 SLCO1B1Q9Y6L6 691 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 DNAH14Q0VDD8 3507 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 PLOD3O60568 738 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 CYP7B1O75881 506 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 SRFP11831 508 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 GSTM3P21266 225 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 RPS4Y1P22090 263 aaKnown RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 OPRL1P41146 370 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 C21orf59P57076 290 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 PPP1CAP62136 330 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 OLR1P78380 273 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 MGAT2Q10469 447 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 SMAD4Q13485 552 aaKnown RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 DUSP5Q16690 384 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 OR4N5Q8IXE1 308 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 FAM26EQ8N5C1 309 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 OR52P1PQ8NH57 321 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 GPR174Q9BXC1 333 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 SLIRPQ9GZT3 109 aaKnown RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 TTYH1Q9H313 450 aaPredicted RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 SEMA4GQ9NTN9 838 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 ZNF443Q9Y2A4 671 aaPredicted RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 IFT52Q9Y366 437 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 FGF17O60258 216 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 DGUOKQ16854 277 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 SYT16Q17RD7 645 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 ZNF542PQ5EBM4 170 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 Q6ZNX1 250 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 TAF8Q7Z7C8 310 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 OOSP2Q86WS3 158 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 KIF18BQ86Y91 864 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 SHISA5Q8N114 240 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 HOXB13Q92826 284 aaPredicted RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 SAP130Q9H0E3 1048 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 SEMA6CQ9H3T2 930 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 PIGUQ9H490 435 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 TBC1D23Q9NUY8 699 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 LSM2Q9Y333 95 aaKnown RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 PCDHGA3Q9Y5H0 932 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 GOLGA4Q13439 2230 aaKnown RBP12.87□□□□□ -0.35
RTN3-210ENST00000540798 TRIOBPQ9H2D6 2365 aa12.87□□□□□ -0.35
RTN3-210ENST00000540798 EFCAB9A8MZ26 197 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 H3BN98 237 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 M0R3G1 203 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ALDH4A1P30038 563 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TRHRP34981 398 aaPredicted RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 LSM3P62310 102 aaKnown RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 CD300CQ08708 224 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 DUSP8Q13202 625 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TRAM2Q15035 370 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 PUS10Q3MIT2 529 aaKnown RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 TRMT12Q53H54 448 aaKnown RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 CASP12Q6UXS9 341 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 PARGQ86W56 976 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 CLIP4Q8N3C7 705 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 SDR16C5Q8N3Y7 309 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 CSNK1A1LQ8N752 337 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 LRRC61Q9BV99 259 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ZNF350Q9GZX5 532 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ARMC7Q9H6L4 198 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 SATB2Q9UPW6 733 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 GPR75O95800 540 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 THY1P04216 161 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 THBS1P07996 1170 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 GADD45AP24522 165 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 GRK5P34947 590 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 RGS6P49758 472 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 EEF1A1P68104 462 aaKnown RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 TUBA1BP68363 451 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 HHEXQ03014 270 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 DOC2BQ14184 412 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 NCF4Q15080 339 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 PRICKLE4Q2TBC4 344 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 ZCCHC12Q6PEW1 402 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TUBA1AQ71U36 451 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ZBTB46Q86UZ6 589 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 GNPDA2Q8TDQ7 276 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ZDHHC1Q8WTX9 485 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 COL26A1Q96A83 441 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 CTHRC1Q96CG8 243 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 IL4I1Q96RQ9 567 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 SDF2Q99470 211 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TAPBPLQ9BX59 468 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TRIM45Q9H8W5 580 aaPredicted RBP12.86□□□□□ -0.35
RTN3-210ENST00000540798 ANKHQ9HCJ1 492 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 ZNF860A6NHJ4 632 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 HCRTR1O43613 425 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 OMPP47874 163 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 GIPRP48546 466 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 BLKP51451 505 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 TAS2R41P59536 307 aa12.86□□□□□ -0.35
RTN3-210ENST00000540798 DECR1Q16698 335 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms