RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 EIPR1Q53HC9 387 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 C6orf136Q5SQH8 315 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 ACAD11Q709F0 780 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 CROCCP2Q86T23 111 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 WDSUB1Q8N9V3 476 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 CA5BP1Q8WTZ4 195 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 RNF138Q8WVD3 245 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 RND1Q92730 232 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 EFHD2Q96C19 240 aaPredicted RBP13.5□□□□□ -0.25
USP28-204ENST00000537642 MTERF3Q96E29 417 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 PGM2Q96G03 612 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 TTYH2Q9BSA4 534 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 C1orf50Q9BV19 199 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 C20orf27Q9GZN8 174 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 KCNK9Q9NPC2 374 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 MAPRE3Q9UPY8 281 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 SLC6A5Q9Y345 797 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 OR10H1Q9Y4A9 318 aa13.5□□□□□ -0.25
USP28-204ENST00000537642 HCFC1P51610 2035 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 C15orf38-AP3S2A0A0A6YYH1 394 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 TMEM114B3SHH9 223 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ZWINTO95229 277 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 HSPA4LO95757 839 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 GLI4P10075 376 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 CYP4B1P13584 511 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 MAPK1P28482 360 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 MANFP55145 182 aaKnown RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 ABCE1P61221 599 aaKnown RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 GAB1Q13480 694 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 TOMM20Q15388 145 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 WIPI1Q5MNZ9 446 aaPredicted RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 C1orf185Q5T7R7 199 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 B3GNT6Q6ZMB0 384 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 CCDC71Q8IV32 467 aaPredicted RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 ULK2Q8IYT8 1036 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ZNF781Q8N8C0 355 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 FAM83FQ8NEG4 500 aaPredicted RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 ZFP28Q8NHY6 868 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ASB5Q8WWX0 329 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ZBED6CLQ96FA7 236 aaPredicted RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 TIMP4Q99727 224 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 LMF2Q9BU23 707 aaKnown RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 SERHLQ9NQF3 203 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ACSS1Q9NUB1 689 aaPredicted RBP13.49□□□□□ -0.25
USP28-204ENST00000537642 ALKBH4Q9NXW9 302 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ATP6V1HQ9UI12 483 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 CBLCQ9ULV8 474 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 PCDHGB3Q9Y5G1 929 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 WIF1Q9Y5W5 379 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 ADGRG4Q8IZF6 3080 aa13.49□□□□□ -0.25
USP28-204ENST00000537642 INTS1Q8N201 2190 aaKnown RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 PCNX3Q9H6A9 2034 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 SCAMP2O15127 329 aaKnown RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 HOXD4P09016 255 aaPredicted RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 MYZAPP0CAP1 466 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 PRF1P14222 555 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 GABRA1P14867 456 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 EFNA1P20827 205 aaPredicted RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 BGNP21810 368 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 CHRNB4P30926 498 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 GPC1P35052 558 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 HPCAL1P37235 193 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 KIR3DL1P43629 444 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 GAS1P54826 345 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 PTGR1Q14914 329 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 CYP27C1Q4G0S4 372 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 IL23RQ5VWK5 629 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 VASNQ6EMK4 673 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 R3HCC1LQ7Z5L2 792 aaKnown RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 YRDCQ86U90 279 aaKnown RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 PIAS4Q8N2W9 510 aaPredicted RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 FNDC5Q8NAU1 212 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 OR7A2PQ8NGA2 310 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 LILRB4Q8NHJ6 448 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 NUDT8Q8WV74 236 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 HOXB13Q92826 284 aaPredicted RBP13.48□□□□□ -0.25
USP28-204ENST00000537642 TUBGCP3Q96CW5 907 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 SORT1Q99523 831 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 EQTNQ9NQ60 294 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 FLRT3Q9NZU0 649 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 NTMQ9P121 344 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 RAP2CQ9Y3L5 183 aa13.48□□□□□ -0.25
USP28-204ENST00000537642 KIAA1549Q9HCM3 1950 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 A0A0G2JNJ9 132 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 GXYLT2A0PJZ3 443 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 C17orf51A8MQB3 221 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 B4DXG7 233 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 CBR3O75828 277 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 SNRPB2P08579 225 aaKnown RBP13.47□□□□□ -0.25
USP28-204ENST00000537642 LAMP1P11279 417 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 PRPS2P11908 318 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 BMP7P18075 431 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 GABRA3P34903 492 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 EVI2BP34910 448 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 ADH7P40394 386 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 MAP3K8P41279 467 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 SLC1A6P48664 564 aa13.47□□□□□ -0.25
USP28-204ENST00000537642 MRPS22P82650 360 aaKnown RBP13.47□□□□□ -0.25
USP28-204ENST00000537642 ZNHIT3Q15649 155 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms