RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SNAPC4Q5SXM2 1469 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 TARBP1Q13395 1621 aaKnown RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 SYNJ2BP-COX16A0A087WUM0 186 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 A0A1B0GUL7 405 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 SH3PXD2BA1X283 911 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 SH2D1BO14796 132 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 ADAM12O43184 909 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CSO75390 466 aaKnown RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 ANXA9O76027 345 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 OR9G9P0C7N8 305 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 KRT13P13646 458 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 FOSL2P15408 326 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 IFNAR2P48551 515 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 NAPAP54920 295 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 SLC17A1Q14916 467 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 TPD52L1Q16890 204 aaPredicted RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 PARP6Q2NL67 630 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 LRIT3Q3SXY7 679 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 PRR30Q53SZ7 412 aaPredicted RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 UTF1Q5T230 341 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 LIPKQ5VXJ0 399 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 RHBDD2Q6NTF9 364 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CCBE1Q6UXH8 406 aaPredicted RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 DPY19L2P2Q6ZN68 376 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 GPBP1Q86WP2 473 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CCDC71Q8IV32 467 aaPredicted RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 WDR49Q8IV35 697 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 LINC00518Q8N0U6 118 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CD177Q8N6Q3 437 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 SAMD12Q8N8I0 201 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 FADS6Q8N9I5 356 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 KLHL30-AS1Q8NEE0 82 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 OR6T1Q8NGN1 323 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 FBXO25Q8TCJ0 367 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CCDC51Q96ER9 411 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CAPNS2Q96L46 248 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 DCTPP1Q9H773 170 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 NT5DC2Q9H857 520 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 WDR76Q9H967 626 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 POLD4Q9HCU8 107 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 YAE1D1Q9NRH1 226 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 CUTCQ9NTM9 273 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 MRPS7Q9Y2R9 242 aaKnown RBP3.49□□□□□ -1.85
CD44-223ENST00000526553 IKBKGQ9Y6K9 419 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 KIF13AQ9H1H9 1805 aa3.49□□□□□ -1.85
CD44-223ENST00000526553 H3BTX0 84 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 MCF2LO15068 1137 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ZNF253O75346 499 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 STK17BO94768 372 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 CALCAP01258 141 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 PCCBP05166 539 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 DUX4L4P0CJ87 422 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 OTX2P32243 289 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ADRA1AP35348 466 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 RPL27P61353 136 aaKnown RBP3.48□□□□□ -1.85
CD44-223ENST00000526553 NAAAQ02083 359 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 C17orf58Q2M2W7 97 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 HKDC1Q2TB90 917 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ADPRMQ3LIE5 342 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 DCAF4L1Q3SXM0 396 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 RSBN1Q5VWQ0 802 aaPredicted RBP3.48□□□□□ -1.85
CD44-223ENST00000526553 TMEM110Q86TL2 294 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 GCNT2Q8N0V5 402 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ZNF397Q8NF99 534 aaPredicted RBP3.48□□□□□ -1.85
CD44-223ENST00000526553 WDR36Q8NI36 951 aaKnown RBP3.48□□□□□ -1.85
CD44-223ENST00000526553 NTNG2Q96CW9 530 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 TSPAN18Q96SJ8 248 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 C19orf43Q9BQ61 176 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 TEX13BQ9BXU2 312 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 MRPL13Q9BYD1 178 aaKnown RBP3.48□□□□□ -1.85
CD44-223ENST00000526553 SLITRK2Q9H156 845 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ZBP1Q9H171 429 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 CXXC4Q9H2H0 198 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ABCD2Q9UBJ2 740 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 P2RX2Q9UBL9 471 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 CIDEBQ9UHD4 219 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 ATP6V1HQ9UI12 483 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 XPO7Q9UIA9 1087 aaKnown RBP3.48□□□□□ -1.85
CD44-223ENST00000526553 FOXJ3Q9UPW0 622 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 KIF25-AS1Q9Y6Z4 181 aa3.48□□□□□ -1.85
CD44-223ENST00000526553 CCDC88BA6NC98 1476 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 GAPVD1Q14C86 1478 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 AFF2P51816 1311 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 SOGA1O94964 1423 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 PBRM1Q86U86 1689 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 NPIPA5A0A0B4J1W7 369 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 A0A0U1RQV5 110 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 GPR89AB7ZAQ6 455 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 NPIPA5E9PKD4 350 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 TBX19O60806 448 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 RHOBTB1O94844 696 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 CCDC159P0C7I6 412 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 SLC35G4P0C7Q5 338 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 GPR89BP0CG08 455 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 ZCCHC18P0CG32 403 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 ID1P41134 155 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 RPS4XP62701 263 aaKnown RBP3.47□□□□□ -1.85
CD44-223ENST00000526553 IL9RQ01113 521 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 SLC36A3Q495N2 470 aa3.47□□□□□ -1.85
CD44-223ENST00000526553 LRRC23Q53EV4 343 aaPredicted RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms