RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 B3GAT3O94766 335 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 TBX6O95947 436 aaPredicted RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 MBD3O95983 291 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 GAS8O95995 478 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 LYNP07948 512 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 ADORA3P0DMS8 318 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 CCNE1P24864 410 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 RPL9P32969 192 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 FEN1P39748 380 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 FRKP42685 505 aaPredicted RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 OR3A1P47881 315 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 CASP4P49662 377 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 TFAMQ00059 246 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 SLC3A1Q07837 685 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 CNTN1Q12860 1018 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 ELAVL2Q12926 359 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 SLMAPQ14BN4 828 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 RPS6KA1Q15418 735 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 PSMD5Q16401 504 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 SMU1Q2TAY7 513 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 MS4A18Q3C1V0 323 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 KBTBD12Q3ZCT8 623 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 ODF2Q5BJF6 829 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 C1orf220Q5T0J3 134 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 LINC00696Q6ZRV3 163 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 RBM43Q6ZSC3 357 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 WDR49Q8IV35 697 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 ZC3H3Q8IXZ2 948 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 ZNF440Q8IYI8 595 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 SLC22A15Q8IZD6 547 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 NUP93Q8N1F7 819 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 THEM5Q8N1Q8 247 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 MRPL43Q8N983 215 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 OR9Q2Q8NGE9 314 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 OR5B17Q8NGF7 314 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 OR10G7Q8NGN6 311 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 GOLGA5Q8TBA6 731 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 NELFBQ8WX92 580 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 ITFG2Q969R8 447 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 CCDC127Q96BQ5 260 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 BPIFA2Q96DR5 249 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 ZNF560Q96MR9 790 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 FAM218AQ96MZ4 157 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 FAM210AQ96ND0 272 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 LGMNQ99538 433 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 TSG101Q99816 390 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 PRMT1Q99873 361 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 PAIP2Q9BPZ3 127 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 ZNF559Q9BR84 538 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 DESI2Q9BSY9 194 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 PAPOLGQ9BWT3 736 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 RSPH9Q9H1X1 276 aaPredicted RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 C5orf66Q9H5L9 145 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 UBE2ZQ9H832 354 aaPredicted RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 MRPL17Q9NRX2 175 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 GPR173Q9NS66 373 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 DNAJC17Q9NVM6 304 aaKnown RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 DMAC2Q9NW81 257 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 MTRRQ9UBK8 725 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 BARX2Q9UMQ3 279 aaPredicted RBP3.24□□□□□ -1.89
CD44-219ENST00000525685 GPR132Q9UNW8 380 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 TMED7Q9Y3B3 224 aa3.24□□□□□ -1.89
CD44-219ENST00000525685 MAGEB16A2A368 324 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 ANKDD1BA6NHY2 528 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 ERI2A8K979 691 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 A8MXK9 166 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 TMCO5BA8MYB1 307 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CETN3O15182 167 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 MAPK13O15264 365 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SIGLEC5O15389 551 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 B4GAT1O43505 415 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 HCRTO43612 131 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 TRAPPC3O43617 180 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 POP4O95707 220 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 CXCL14O95715 111 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 TNNC2P02585 160 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SBK2P0C263 348 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 OR4Q2P0C623 313 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 EPB41P11171 864 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 ODC1P11926 461 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 IL9P15248 144 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 TNNI1P19237 187 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 ZNF10P21506 573 aaPredicted RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 PKLRP30613 574 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SRD5A2P31213 254 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SERPINB6P35237 376 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 SCN1AP35498 2009 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 PPP1R2P41236 205 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CLCN4P51793 760 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 GSCP56915 257 aaPredicted RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 STX17P56962 302 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 ABCE1P61221 599 aaKnown RBP3.23□□□□□ -1.89
CD44-219ENST00000525685 STX1BP61266 288 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 LRRC63Q05C16 580 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 ENPEPQ07075 957 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CALCOCO2Q13137 446 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 RAPSNQ13702 412 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CEACAM7Q14002 265 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 LYPLAL1Q5VWZ2 237 aa3.23□□□□□ -1.89
CD44-219ENST00000525685 CENPPQ6IPU0 288 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms