RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 AGAP7PQ5VUJ5 663 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 ACSM5Q6NUN0 579 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 KIAA1324Q6UXG2 1013 aaKnown RBP13.91□□□□□ -0.18
NUP54-217ENST00000514987 PLEKHM3Q6ZWE6 761 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 VRK2Q86Y07 508 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 IQCF1Q8N6M8 205 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 CLDN22Q8N7P3 220 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 OR7G2Q8NG99 324 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 OR52I1Q8NGK6 324 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 SLC6A18Q96N87 628 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 SAP130Q9H0E3 1048 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 TMEM168Q9H0V1 697 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 SYNPO2LQ9H987 977 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 NLGN3Q9NZ94 848 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 PILRAQ9UKJ1 303 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 ZNF443Q9Y2A4 671 aaPredicted RBP13.91□□□□□ -0.18
NUP54-217ENST00000514987 EXOSC1Q9Y3B2 195 aaKnown RBP13.91□□□□□ -0.18
NUP54-217ENST00000514987 SLC22A7Q9Y694 548 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 SNRNP200O75643 2136 aaKnown RBP13.9□□□□□ -0.18
NUP54-217ENST00000514987 A0A087WV62 115 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 TMEM129A0AVI4 362 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 HYKKA2RU49 373 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 OR5K4A6NMS3 321 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 C2orf74A8MZ97 194 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 GPX5O75715 221 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 AK1P00568 194 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 CPMP14384 443 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 MAGP20916 626 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 PTGER1P34995 402 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 OMPP47874 163 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 DUSP8Q13202 625 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 LTB4RQ15722 352 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 ALG11Q2TAA5 492 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 PUS10Q3MIT2 529 aaKnown RBP13.9□□□□□ -0.18
NUP54-217ENST00000514987 MINDY4Q4G0A6 757 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 C6orf132Q5T0Z8 1188 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 FCRL6Q6DN72 434 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 FRRS1Q6ZNA5 592 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 OLIG3Q7RTU3 272 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 KIF18BQ86Y91 864 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 LYSMD2Q8IV50 215 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 NECTIN4Q96NY8 510 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 MCHR1Q99705 422 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 ZFYVE21Q9BQ24 234 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 NEURL2Q9BR09 285 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 ASPNQ9BXN1 380 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 PIGUQ9H490 435 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 SEMA4GQ9NTN9 838 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 POT1Q9NUX5 634 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 C19orf53Q9UNZ5 99 aaPredicted RBP13.9□□□□□ -0.18
NUP54-217ENST00000514987 SATB2Q9UPW6 733 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 WDR45Q9Y484 360 aa13.9□□□□□ -0.18
NUP54-217ENST00000514987 A0A1W2PS29 197 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 OR6C74A6NCV1 312 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 CPSF4LA6NMK7 179 aaKnown RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 KDM4EB2RXH2 506 aaPredicted RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 ZNF670-ZNF695F2Z2N8 137 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 STK25O00506 426 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 PTTG1O95997 202 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 TNFP01375 233 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 CKMT1AP12532 417 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 CPEP16870 476 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 ALOX12P18054 663 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 MAGEA10P43363 369 aaPredicted RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 RORCP51449 518 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 PDX1P52945 283 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 DEFA1P59665 94 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 DEFA3P59666 94 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 RUNX2Q13950 521 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 DEFB134Q4QY38 66 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 MBOAT2Q6ZWT7 520 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 PRICKLE2Q7Z3G6 844 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 RANBP3LQ86VV4 465 aaPredicted RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 CDS1Q92903 461 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 CEP19Q96LK0 163 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 GPA33Q99795 319 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 QRSL1Q9H0R6 528 aaKnown RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 EXOSC4Q9NPD3 245 aaKnown RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 CLEC2DQ9UHP7 191 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 PIAS3Q9Y6X2 628 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 MN1Q10571 1320 aaPredicted RBP13.89□□□□□ -0.19
NUP54-217ENST00000514987 CHD7Q9P2D1 2997 aa13.89□□□□□ -0.19
NUP54-217ENST00000514987 KIR2DS5A0A0G2JLQ3 304 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 A0A0G2JNG1 304 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 KIR2DS3K7RE56 304 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RFXAPO00287 272 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CTSVO60911 334 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 HMGN1P05114 100 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 DBIP07108 87 aaKnown RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 POLR2CP19387 275 aaPredicted RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 ACSL1P33121 698 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 CRYBB2P43320 205 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RABIFP47224 123 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 AVPR1BP47901 424 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 MTNR1AP48039 350 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 TPMTP51580 245 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 WNT4P56705 351 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RPS3AP61247 264 aaKnown RBP13.88□□□□□ -0.19
NUP54-217ENST00000514987 BNC1Q01954 994 aa13.88□□□□□ -0.19
NUP54-217ENST00000514987 RUNX1T1Q06455 604 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms