RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 A0A087WZY1 265 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 A0A0U1RQV5 110 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZNF840PA6NDX5 716 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 K7EPI3 171 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 CLDN3O15551 220 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 PRAMEF12O95522 483 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 UQCRBP14927 111 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 DESP17661 470 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 TNNI3P19429 210 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 BCL3P20749 454 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 CYP2F1P24903 491 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 EXOSC2Q13868 293 aaKnown RBP3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 RAB35Q15286 201 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 EIPR1Q53HC9 387 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 BTNL3Q6UXE8 466 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 HACD2Q6Y1H2 254 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZBTB44Q8NCP5 570 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 RFESDQ8TAC1 157 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 FNDC8Q8TC99 324 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 TADA1Q96BN2 335 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 C11orf24Q96F05 449 aaPredicted RBP3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 ELMO2Q96JJ3 720 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 VSTM2LQ96N03 204 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 FOXN4Q96NZ1 517 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 MCCC1Q96RQ3 725 aaPredicted RBP3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 APOL2Q9BQE5 337 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 LIN28AQ9H9Z2 209 aaKnown RBP3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 LPAR2Q9HBW0 351 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 POLD4Q9HCU8 107 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 C1orf123Q9NWV4 160 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 FAM120CQ9NX05 1096 aaKnown RBP3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 IMPAD1Q9NX62 359 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 BARX2Q9UMQ3 279 aaPredicted RBP3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 U3KQV3 271 aa3.16□□□□□ -1.9
HMGB1P28-201ENST00000507778 PARD3Q8TEW0 1356 aa3.15□□□□□ -1.9
HMGB1P28-201ENST00000507778 IGKV3D-20A0A0C4DH25 116 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 WASHC1A8K0Z3 465 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CHADO15335 359 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 LCMT2O60294 686 aaKnown RBP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 SMPD2O60906 423 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 ZNF253O75346 499 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 AK1P00568 194 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 IFNB1P01574 187 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 THRBP10828 461 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 NCF1P14598 390 aaPredicted RBP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 ADRA1AP35348 466 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 PTGFRP43088 359 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 POU3F4P49335 361 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CSRP3P50461 194 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 IST1P53990 364 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 NAPAP54920 295 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 OSTNP61366 133 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 TFDP1Q14186 410 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 TRIP10Q15642 601 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 UBE2V2Q15819 145 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CDKN3Q16667 212 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 C15orf32Q32M92 178 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 SLC22A6Q4U2R8 563 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CYBRD1Q53TN4 286 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 SLX4IPQ5VYV7 408 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 LRRC8BQ6P9F7 803 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 AFTPHQ6ULP2 937 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CCBE1Q6UXH8 406 aaPredicted RBP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 ERASQ7Z444 233 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 LHFPL4Q7Z7J7 247 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CBWD2Q8IUF1 395 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 EFCAB13Q8IY85 973 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 GCNT2Q8N0V5 402 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 TFB1MQ8WVM0 346 aaKnown RBP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 ANKRD9Q96BM1 317 aaPredicted RBP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 PYGO2Q9BRQ0 406 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 TBCDQ9BTW9 1192 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 COG4Q9H9E3 785 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 PRODH2Q9UF12 536 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 NTNG1Q9Y2I2 539 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 EXOSC1Q9Y3B2 195 aaKnown RBP3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 KIF3AQ9Y496 699 aa3.15□□□□□ -1.91
HMGB1P28-201ENST00000507778 CCDC7Q96M83 1385 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 ZSCAN5CA6NGD5 496 aaPredicted RBP3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 CCT8L1PA6NM43 557 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 EFCAB7A8K855 629 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 SAP18O00422 153 aaKnown RBP3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 CASKO14936 926 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 TM9SF1O15321 606 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 RHBDL1O75783 438 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 OR4F21O95013 312 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 HEXBP07686 556 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 IGFBP1P08833 259 aaPredicted RBP3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 SDC1P18827 310 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 IGFBP5P24593 272 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 CYLC1P35663 651 aaPredicted RBP3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 MDH1P40925 334 aaKnown RBP3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 TRPC1P48995 793 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 EMDP50402 254 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 ARHGDIBP52566 201 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 RPS6P62753 249 aaKnown RBP3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 SLC10A1Q14973 349 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 DCAF4L1Q3SXM0 396 aa3.14□□□□□ -1.91
HMGB1P28-201ENST00000507778 ZNF311Q5JNZ3 666 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms