RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TCRBV9S1A1TA0A576 114 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 ACOX3O15254 700 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 GBAP04062 536 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 CD1DP15813 335 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 H2AFXP16104 143 aaPredicted RBP14.77□□□□□ -0.05
VIM-208ENST00000497849 EPB42P16452 691 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 NT5EP21589 574 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 PIK3CBP42338 1070 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 XKP51811 444 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 EXOSC7Q15024 291 aaKnown RBP14.77□□□□□ -0.05
VIM-208ENST00000497849 TMEM249Q2WGJ8 235 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 GRHL2Q6ISB3 625 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 FAM111BQ6SJ93 734 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 CYP20A1Q6UW02 462 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.77□□□□□ -0.05
VIM-208ENST00000497849 SMAP2Q8WU79 429 aaPredicted RBP14.77□□□□□ -0.05
VIM-208ENST00000497849 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.77□□□□□ -0.05
VIM-208ENST00000497849 ROBO4Q8WZ75 1007 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 FBXW5Q969U6 566 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 MRRFQ96E11 262 aaKnown RBP14.77□□□□□ -0.05
VIM-208ENST00000497849 KCNK17Q96T54 332 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 CENPKQ9BS16 269 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 MCMBPQ9BTE3 642 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 TXLNGYQ9BZA5 131 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 ACTR6Q9GZN1 396 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 PLSCR4Q9NRQ2 329 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 ZNF175Q9Y473 711 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 MEGF8Q7Z7M0 2845 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 MALRD1Q5VYJ5 2156 aa14.77□□□□□ -0.05
VIM-208ENST00000497849 IGHV4-30-2A0A087WSY4 118 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 AQP8O94778 261 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 CPMP14384 443 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 GAS1P54826 345 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 ZNF844Q08AG5 666 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 FRG1Q14331 258 aaKnown RBP14.76□□□□□ -0.05
VIM-208ENST00000497849 PRICKLE4Q2TBC4 344 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 PGGHGQ32M88 737 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 RELL1Q8IUW5 271 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 OR4K14Q8NGD5 310 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 TMCO6Q96DC7 493 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 TSPYL1Q9H0U9 437 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 BCAP29Q9UHQ4 241 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 ZNF639Q9UID6 485 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 CFL2Q9Y281 166 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 ZNF337Q9Y3M9 751 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 TSC22D4Q9Y3Q8 395 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 RNF115Q9Y4L5 304 aa14.76□□□□□ -0.05
VIM-208ENST00000497849 FREM1Q5H8C1 2179 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 OR6C70A6NIJ9 312 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 FAM159BA6NKW6 160 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 TO15178 435 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 SEC14L5O43304 696 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 CBX7O95931 251 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 GSTA2P09210 222 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 CCDC166P0CW27 439 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 DRD5P21918 477 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 GRK2P25098 689 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 PTX3P26022 381 aaPredicted RBP14.75□□□□□ -0.05
VIM-208ENST00000497849 NEK2P51955 445 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 CLDN20P56880 219 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 EEFSECP57772 596 aaKnown RBP14.75□□□□□ -0.05
VIM-208ENST00000497849 FAPQ12884 760 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 SLMAPQ14BN4 828 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 C6orf163Q5TEZ5 329 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 NUDT13Q86X67 352 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 CTAGE3PQ8IX95 158 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 PPM1NQ8N819 430 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 RNF138Q8WVD3 245 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 EXT2Q93063 718 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 TMBIM1Q969X1 311 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 SLC35A4Q96G79 324 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 COL21A1Q96P44 957 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 TNFRSF13CQ96RJ3 184 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 CAB39LQ9H9S4 337 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 LRTM1Q9HBL6 345 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 MAT2BQ9NZL9 334 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 LPAR3Q9UBY5 353 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 PLLPQ9Y342 182 aa14.75□□□□□ -0.05
VIM-208ENST00000497849 CLOCKO15516 846 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 CD8AP01732 235 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 PORP16435 677 aaPredicted RBP14.74□□□□□ -0.05
VIM-208ENST00000497849 PPICP45877 212 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 DSCR4P56555 118 aaPredicted RBP14.74□□□□□ -0.05
VIM-208ENST00000497849 VLDLRP98155 873 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 MAP4K2Q12851 820 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 CUL3Q13618 768 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 CTU2Q2VPK5 515 aaKnown RBP14.74□□□□□ -0.05
VIM-208ENST00000497849 NCMAPQ5T1S8 102 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 EMBQ6PCB8 327 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 ARIH2OSQ8N7S6 290 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 GBP7Q8N8V2 638 aaPredicted RBP14.74□□□□□ -0.05
VIM-208ENST00000497849 ADCY4Q8NFM4 1077 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 OR6K3Q8NGY3 331 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 AENQ8WTP8 325 aaKnown RBP14.74□□□□□ -0.05
VIM-208ENST00000497849 DTNBP1Q96EV8 351 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 C11orf24Q96F05 449 aaPredicted RBP14.74□□□□□ -0.05
VIM-208ENST00000497849 HS6ST2Q96MM7 605 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 RHNO1Q9BSD3 238 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 NTMT1Q9BV86 223 aa14.74□□□□□ -0.05
VIM-208ENST00000497849 BRINP2Q9C0B6 783 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms