RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 CDRT15Q96T59 188 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 ITPAQ9BY32 194 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 DEFB126Q9BYW3 111 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 OR51I1Q9H343 314 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 IKZF5Q9H5V7 419 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 PIF1Q9H611 641 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 CMTM6Q9NX76 183 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 ABI3Q9P2A4 366 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 PACSIN3Q9UKS6 424 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 AP3M1Q9Y2T2 418 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.42□□□□□ -0.42
MSH6-208ENST00000493177 KALRNO60229 2985 aa12.42□□□□□ -0.42
MSH6-208ENST00000493177 A8MUI8 341 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 PSMG1O95456 288 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 OR12D1P0DN82 309 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 ACP2P11117 423 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 ITGAMP11215 1152 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 GABRA3P34903 492 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 GPR143P51810 404 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 DSTNP60981 165 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 FADDQ13158 208 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 RGNQ15493 299 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 NNATQ16517 81 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 GCNT6Q5T4J0 391 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 C8orf82Q6P1X6 216 aaPredicted RBP12.41□□□□□ -0.42
MSH6-208ENST00000493177 ZCCHC12Q6PEW1 402 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 IFNEQ86WN2 208 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 C9orf40Q8IXQ3 194 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 SLC15A3Q8IY34 581 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 FAM26EQ8N5C1 309 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 HORMAD2Q8N7B1 307 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 APCDD1LQ8NCL9 501 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 OR5D16Q8NGK9 328 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 OR5L2Q8NGL0 311 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 GPR151Q8TDV0 419 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 THAP3Q8WTV1 239 aaPredicted RBP12.41□□□□□ -0.42
MSH6-208ENST00000493177 XAGE5Q8WWM1 108 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 RAB8BQ92930 207 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 MCUR1Q96AQ8 359 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 SNRNP40Q96DI7 357 aaKnown RBP12.41□□□□□ -0.42
MSH6-208ENST00000493177 THTPAQ9BU02 230 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 MMP25Q9NPA2 562 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 ASF1BQ9NVP2 202 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 TMEM181Q9P2C4 612 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 ZNF223Q9UK11 482 aaPredicted RBP12.41□□□□□ -0.42
MSH6-208ENST00000493177 PPIEQ9UNP9 301 aaKnown RBP12.41□□□□□ -0.42
MSH6-208ENST00000493177 DTX4Q9Y2E6 619 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 CSAG2Q9Y5P2 127 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 SPTA1P02549 2419 aa12.41□□□□□ -0.42
MSH6-208ENST00000493177 TLN1Q9Y490 2541 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 TMEM247A6NEH6 219 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 DUXAA6NLW8 204 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 NME4O00746 187 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 PRKNO60260 465 aaPredicted RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 DNAJC8O75937 253 aaPredicted RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 AGFG2O95081 481 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 F10P00742 488 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 SOX11P35716 441 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 RNF4P78317 190 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 TXNL4AP83876 142 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 LIPEQ05469 1076 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 EBPQ15125 230 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 SAMD4BQ5PRF9 694 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 ATAD3BQ5T9A4 648 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 B3GNTL1Q67FW5 361 aaPredicted RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 FAM180AQ6UWF9 173 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 YTHDF3Q7Z739 585 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 SLC44A2Q8IWA5 706 aaPredicted RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 RNF148Q8N7C7 305 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 COX18Q8N8Q8 333 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 SLC16A11Q8NCK7 471 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 PRR7Q8TB68 274 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 ELP5Q8TE02 316 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 VSTM2LQ96N03 204 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 LMF2Q9BU23 707 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 WWTR1Q9GZV5 400 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 LRMDAQ9H2I8 198 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 SERHL2Q9H4I8 314 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 KAT8Q9H7Z6 458 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 LIN28AQ9H9Z2 209 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 Q9N2J8 555 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 EXD2Q9NVH0 621 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 PLA2G3Q9NZ20 509 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 PRPF19Q9UMS4 504 aaKnown RBP12.4□□□□□ -0.42
MSH6-208ENST00000493177 OR10H1Q9Y4A9 318 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 PCDHGA10Q9Y5H3 936 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 SHANK1Q9Y566 2161 aa12.4□□□□□ -0.42
MSH6-208ENST00000493177 TTC36A6NLP5 189 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 HMGN4O00479 90 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 AGR2O95994 175 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 NUDT7P0C024 238 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 GPX2P18283 190 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 TCN1P20061 433 aaPredicted RBP12.39□□□□□ -0.43
MSH6-208ENST00000493177 PGM1P36871 562 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 MAGEA8P43361 318 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 PPICP45877 212 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 RFX3P48380 749 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 NR0B1P51843 470 aaKnown RBP12.39□□□□□ -0.43
MSH6-208ENST00000493177 MVDP53602 400 aa12.39□□□□□ -0.43
MSH6-208ENST00000493177 CORO7P57737 925 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms